Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,049,942 – 8,050,059 |
Length | 117 |
Max. P | 0.992440 |
Location | 8,049,942 – 8,050,059 |
---|---|
Length | 117 |
Sequences | 4 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 87.01 |
Mean single sequence MFE | -22.80 |
Consensus MFE | -18.70 |
Energy contribution | -18.70 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -3.09 |
Structure conservation index | 0.82 |
SVM decision value | 2.33 |
SVM RNA-class probability | 0.992440 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8049942 117 - 20766785 AACUUCAUUUGCUUGCCAACCAAAGCGAGCGACUUUUUCAAUUAAUGUAGCCCAUGGGCACGCGAAACCUGAAACCAGAAAAUGCAAGA--AAAACAAAAAAAAAAAACACCAUAAAAA ........((((((((........)))))))).((((((.......((.(((....)))))(((....(((....)))....)))..))--))))........................ ( -23.40) >DroSec_CAF1 14989 107 - 1 AACUUCAUUUGCUUGCCAACCAAAGCGAGCGACUUUUUCAAUUAAUGUAGCCCAUGGGCACGCGAAACCUGAAACCAGAAAAUGCAAA------------AAAAAAAAAAGCAUAAAAA ........((((((((........))))))))((((((........((.(((....)))))(((....(((....)))....)))...------------.....))))))........ ( -21.90) >DroEre_CAF1 13256 112 - 1 AACUUCAUUUGCUUGCCAACCAAAGCGAGCGACUUUUUCAAUUAAUGUAGCCCAUGGGCACGCGAAACCUGAAACCAGAAAAUACUUUACAAG-------AAGAAAAAAAAGAAAGAAA ..((((..((((((((........)))))))).............(((((((....))).........(((....))).........)))).)-------)))................ ( -23.70) >DroYak_CAF1 13154 105 - 1 AACUUCAUUUGCUUGCCAACCAAAGCGAGCGACUUUUUCAAUUAAUGUAGCCCAUGGGCACGCGAAACCUGAAACCAGAAAAUGCUUCA--------------AAAAAAAGAAAAUAAA ........((((((((........))))))))..(((((.......((.(((....)))))(((....(((....)))....)))....--------------.......))))).... ( -22.20) >consensus AACUUCAUUUGCUUGCCAACCAAAGCGAGCGACUUUUUCAAUUAAUGUAGCCCAUGGGCACGCGAAACCUGAAACCAGAAAAUGCAAAA___________AAAAAAAAAAGCAAAAAAA ...(((..((((((((........))))))))..............((.(((....)))))..)))..(((....)))......................................... (-18.70 = -18.70 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:54 2006