| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 8,049,835 – 8,049,926 |
| Length | 91 |
| Max. P | 0.778312 |
| Location | 8,049,835 – 8,049,926 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 91 |
| Reading direction | forward |
| Mean pairwise identity | 90.79 |
| Mean single sequence MFE | -26.12 |
| Consensus MFE | -19.87 |
| Energy contribution | -21.62 |
| Covariance contribution | 1.75 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.778312 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8049835 91 + 20766785 GCCAGUGGAGCGAGCGAUAAGACAGGCUGGCAAAGUAAACAAAGUUUUUGCAUUGUUUUUUCACCAGCCCCCCUUUUGCAUCUUCGCUUCU ......(((((((((((.(((...((((((..(((.((((((.((....)).)))))))))..))))))...)))))))....))))))). ( -29.80) >DroSec_CAF1 14882 91 + 1 GCCAGUGGAGCGAGCGAUAAGACAGGCUGGCAAAGUAAACAAAGUUUUUGCAUUGUUUUUCCACCAGCCCCCCUUUUGCAUCUUCGCUUCU ......(((((((((((.(((...((((((......((((((.((....)).)))))).....))))))...)))))))....))))))). ( -29.10) >DroEre_CAF1 13160 80 + 1 GCCAGUGGAGCGAGCGAUAAGACAGGCUGGCAAAGUAAACAAAGUUUUUGCAUUGUUUUUUCCACAGCCCC---UUUGCAUCU-------- ....(((((((.(((..........))).)).....((((((.((....)).))))))..))))).((...---...))....-------- ( -18.80) >DroYak_CAF1 13051 87 + 1 GCCAGUGGAGCGAGCGAUAAGACAGGCUGGCAAAGUAAACAAAGUUUUUGCAUUGUUU-UUCCACAGCCCC---UUUGCAUCUUCGCUUCU ......((((((((.(((.(((..(((((.......((((((.((....)).))))))-.....)))))..---)))..))))))))))). ( -26.80) >consensus GCCAGUGGAGCGAGCGAUAAGACAGGCUGGCAAAGUAAACAAAGUUUUUGCAUUGUUUUUUCAACAGCCCC___UUUGCAUCUUCGCUUCU ...(((((((...((((.......((((((......((((((.((....)).)))))).....))))))......))))..)))))))... (-19.87 = -21.62 + 1.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:53 2006