Locus 2165

Sequence ID 2R_DroMel_CAF1
Location 8,048,226 – 8,048,323
Length 97
Max. P 0.975861
window3577

overview

Window 7

Location 8,048,226 – 8,048,323
Length 97
Sequences 4
Columns 110
Reading direction forward
Mean pairwise identity 77.38
Mean single sequence MFE -27.83
Consensus MFE -16.08
Energy contribution -15.95
Covariance contribution -0.13
Combinations/Pair 1.17
Mean z-score -2.48
Structure conservation index 0.58
SVM decision value 1.76
SVM RNA-class probability 0.975861
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8048226 97 + 20766785
GUUCGUCUUUCGAAGGUUGUGGGUUCUUAAGAUG------UAUACUCCAUAUAGAUGUAU-------GUACACACAUAUAUGCAUGACUAAGAGUCGCUUGAAGGACUCG
....(((((((((.((.((((.(((.....))).------))))..))......((((((-------(((......)))))))))(((.....)))..)))))))))... ( -23.60)
>DroSec_CAF1 13294 104 + 1
GUUCGUCUUUCGAAGGUUGUGGGUUCUUAAGAUG------CGUACUCUAUAUAGAUGUAUGUUCAAUGUACAUACAUAUAUGCAUGACUAAGAGCCGCUUGAAGGACUCG
....(((((((((.....((((.((((((..(((------((((((......))((((((((.......)))))))).)))))))...)))))))))))))))))))... ( -32.10)
>DroEre_CAF1 11566 101 + 1
GUUGGUCUUUCGAAGGUACUGUGUUCUUAAGAUGAACGAGUAUACUAUAUA--AUAAUAU-------GUACAUACAUAUAUGCAUGACUAAGUGCCGCUCAAAGGACUCG
...(((((((.((.((((((.(((((.......))))).((((..((((((--....)))-------))).))))...............))))))..)).))))))).. ( -24.10)
>DroYak_CAF1 11491 87 + 1
GUUUGUCUUUCGAAGGUACUGGGUUUUUAAGAUG------UAUACUAUAUA-----------------UAGGUACAUAUAUAGAUGACUAAGUGCCGCUCGAAGGACUCG
....(((((((((.((((((.((((((((..(((------(((.(((....-----------------)))))))))...)))).)))).))))))..)))))))))... ( -31.50)
>consensus
GUUCGUCUUUCGAAGGUACUGGGUUCUUAAGAUG______UAUACUAUAUA__GAUGUAU_______GUACAUACAUAUAUGCAUGACUAAGAGCCGCUCGAAGGACUCG
....(((((((((.((((((.(((((....))..........................................(((......)))))).))))))..)))))))))... (-16.08 = -15.95 +  -0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:52 2006