Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,047,917 – 8,048,032 |
Length | 115 |
Max. P | 0.733819 |
Location | 8,047,917 – 8,048,032 |
---|---|
Length | 115 |
Sequences | 4 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 96.10 |
Mean single sequence MFE | -28.10 |
Consensus MFE | -24.20 |
Energy contribution | -24.20 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.97 |
Structure conservation index | 0.86 |
SVM decision value | 0.43 |
SVM RNA-class probability | 0.733819 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8047917 115 - 20766785 UAUAACCACCAUAUGGAAAUGUUUAUUUUGACAAGCGCACCCUC-GGAACGAGCGGAAAAAAUGUGUCCAGGAAUAUGAAAAGGGGUGCGAAAUUAGAAUAACAUGUCACUCAUAU ..........((((((..(((((.(((((((....((((((((.-(((....(((.......))).))).......(....)))))))))...)))))))))))).....)))))) ( -26.70) >DroSec_CAF1 12980 115 - 1 UAUAACCACCAUAUGGAAAUGUUUAUUUUGACAAGCGCACCCUC-GAAACGAGCGGAAAAAAUGUGUCCAGGAAUAUGAAAAGGGGUGCGAAAUUAGAAUAACAUGUCACUCAUAU ..........((((((..(((((.(((((((....(((((((((-(...)))..(((.........)))..............)))))))...)))))))))))).....)))))) ( -25.00) >DroEre_CAF1 11246 115 - 1 UAUAACCACCAUAUGGAAAUGUUUAUUUUGACAAGCGCACCCUC-GGAGGAAGCGGAAAAAAUGUGUCCAGGAAUAUGAAAAGGGGUGCGAAAUUAGAAUAACAUGUCACUCAUAU ..........((((((..(((((.(((((((....((((((((.-...(((.(((.......))).))).......(....)))))))))...)))))))))))).....)))))) ( -27.40) >DroYak_CAF1 11170 116 - 1 CAUAACCACCAUAUGGAUAUGUUUAUUUUGACAAGCGCACCCUCUGGAGGAAGCGGAAAAAAUGUGUCCAGGAACAUGAAAAGGGGUGCGAAAUUAGAAUAACAUGUCACUCAUAU ..........(((((((((((((.(((((((....(((((((((((((....(((.......))).))))).....(....)))))))))...)))))))))))))))...))))) ( -33.30) >consensus UAUAACCACCAUAUGGAAAUGUUUAUUUUGACAAGCGCACCCUC_GGAACAAGCGGAAAAAAUGUGUCCAGGAAUAUGAAAAGGGGUGCGAAAUUAGAAUAACAUGUCACUCAUAU ..........(((((((.(((((.(((((((....((((((((...........(((.........))).......(....)))))))))...)))))))))))).))...))))) (-24.20 = -24.20 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:51 2006