Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,047,306 – 8,047,425 |
Length | 119 |
Max. P | 0.978477 |
Location | 8,047,306 – 8,047,425 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 82.07 |
Mean single sequence MFE | -26.80 |
Consensus MFE | -19.16 |
Energy contribution | -21.32 |
Covariance contribution | 2.16 |
Combinations/Pair | 1.12 |
Mean z-score | -2.58 |
Structure conservation index | 0.71 |
SVM decision value | 1.81 |
SVM RNA-class probability | 0.978477 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8047306 119 + 20766785 AUGGCAUGUCAUAAGUCGCAGGACUUAAUGCCAGAUUUAAUUAAAAGCAUUCCCUCACAUAACUUCAAG-CUUUAUGUGGUGGGUAUGUAAUUAAAAAAAAAAGAAAACAACUUUACUUA .((((((....((((((....))))))))))))..(((((((....((((.(((((((((((.......-..)))))))).))).)))))))))))........................ ( -29.40) >DroSec_CAF1 12364 113 + 1 AUGGCAUGUCAUAAGUCGCAGGACUUAAUGCCAGAUUUAAUUAAAAGCAUUCCCUCACAUAACUUCAAG-CUUUAUGUGGUGGGUAUGUAAUUAAAAAAA------AACAACUUUACUUA .((((((....((((((....))))))))))))..(((((((....((((.(((((((((((.......-..)))))))).))).)))))))))))....------.............. ( -29.40) >DroEre_CAF1 10620 110 + 1 AUGGCAUGUCAUAAGUCGCAGGACUUAAUGCCAGAUUUAAUUAAAAGCAUUUUCUCGCAUAACUACAAG-CUUUAUGCGGUGGGCAUGUAAUUAAAAAAA---------AACUUUACUAA .((((((....((((((....))))))))))))..(((((((....((((.(((((((((((.......-..)))))))).))).)))))))))))....---------........... ( -25.70) >DroYak_CAF1 10564 109 + 1 AUGGCAUGUCAUAAGUCGCAGGACUUAAUGCCAGAUUUAAUUAAAAGCAUUCCCUCACAUAACUUCAAG-CUUUAUGCGGUGGGUAUGUAAUUAAAA-AA---------AACUUUACUUA .((((((....((((((....))))))))))))..(((((((....((((.(((((.(((((.......-..))))).)).))).))))))))))).-..---------........... ( -25.50) >DroAna_CAF1 13040 101 + 1 AUGGCAUGUCGCUAGUC-CAGGC-------CCAGAUUUAAUUAAAAGCAUUCCCUGACAUAACCCCAGGGCUUACUGUUUUGGAGCGGUAAUUAAAAA-----------UGUUAUGCUUG .((((.....))))...-(((((-------.((..((((((((...((..(((..(((((((((....)).))).))))..)))))..))))))))..-----------))....))))) ( -24.00) >consensus AUGGCAUGUCAUAAGUCGCAGGACUUAAUGCCAGAUUUAAUUAAAAGCAUUCCCUCACAUAACUUCAAG_CUUUAUGUGGUGGGUAUGUAAUUAAAAAAA_________AACUUUACUUA .((((((....((((((....))))))))))))..(((((((....((((.(((((((((((..........)))))))).))).)))))))))))........................ (-19.16 = -21.32 + 2.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:50 2006