Locus 2162

Sequence ID 2R_DroMel_CAF1
Location 8,047,016 – 8,047,121
Length 105
Max. P 0.588241
window3574

overview

Window 4

Location 8,047,016 – 8,047,121
Length 105
Sequences 4
Columns 114
Reading direction reverse
Mean pairwise identity 87.14
Mean single sequence MFE -29.95
Consensus MFE -19.56
Energy contribution -19.88
Covariance contribution 0.31
Combinations/Pair 1.16
Mean z-score -1.84
Structure conservation index 0.65
SVM decision value 0.11
SVM RNA-class probability 0.588241
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8047016 105 - 20766785
UUCUUUCUCGUUUCGAAGAUGGCGCAGAGACGAGAUUCACGGCAGGACAUUUAAUUUGUUUGCAUUAUUUGCGCCUUUUGCGGGGAUUUCCAUUAUCCCU-CCCU--------C
.....(((((((((...(....)...))))))))).....(((.(((((.......)))))(((.....))))))......((((((.......))))))-....--------. ( -29.10)
>DroSec_CAF1 12074 105 - 1
UUCCUUCUCGUUUCGAAGG-GGCGCAGAGACAAGAUUCAGCGCAGGACAUUUAAUUUGUUUGCAUUAUUUGCGCUUUUUGCGGGGAUUUCCAUUAUCCCUUCCCU--------C
..(((((.......)))))-((((((((((......))...((((.(((.......)))))))....))))))))......((((((.......)))))).....--------. ( -28.10)
>DroEre_CAF1 10340 111 - 1
UCCUUCCUCGAUUUGGAG--GGCGAAGGGACGAGAUUCAGCGCAGGACCUUUAAUUUGUUUGCAUUAUUUGCGCUUUUUGCGGGGAUUUCCAUUAUCCCU-CCCUCAUUCCCUC
.((((((.......))))--))...(((((.(((....((((((((.....(((.....))).....))))))))......((((((.......))))))-..)))..))))). ( -32.50)
>DroYak_CAF1 10286 103 - 1
UUCUUUCUCGAUUUGGAG--GGCAAAGGGACGAGAUUCAUCGCAGGACAUUUAAUUUGUUUGCAUUAUUUGCGCUUUUUGCGGGGAUUUCCAUUAUCCCU-CCCU--------C
...............(((--((...(((((.(((((((.((((((((((.......)))))(((.....)))......)))))))))))).....)))))-))))--------) ( -30.10)
>consensus
UUCUUUCUCGAUUCGAAG__GGCGAAGAGACGAGAUUCAGCGCAGGACAUUUAAUUUGUUUGCAUUAUUUGCGCUUUUUGCGGGGAUUUCCAUUAUCCCU_CCCU________C
...((((.......))))...((((((((.((((((.....((((.(((.......)))))))...)))).))))))))))((((((.......)))))).............. (-19.56 = -19.88 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:49 2006