Locus 2161

Sequence ID 2R_DroMel_CAF1
Location 8,046,658 – 8,046,766
Length 108
Max. P 0.766476
window3573

overview

Window 3

Location 8,046,658 – 8,046,766
Length 108
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 75.98
Mean single sequence MFE -24.40
Consensus MFE -10.10
Energy contribution -11.38
Covariance contribution 1.28
Combinations/Pair 1.11
Mean z-score -1.95
Structure conservation index 0.41
SVM decision value 0.52
SVM RNA-class probability 0.766476
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8046658 108 - 20766785
-----UUUGAGCUAAUGAUAAUGACUCUUACGGCUACCAUUUUGUUGGAUUCUAUUUCUUCGAUUUCAGAAUAC--UUUUUCACAGGAAAUCGUGUU-----UGUUUUGGCUCAAAUAAU
-----((((((((((.(((((.((.(((.((((........)))).))).))........(((((((.(((...--...)))....)))))))...)-----)))))))))))))).... ( -24.00)
>DroSec_CAF1 11714 108 - 1
-----UUUGAGCUAAUGAUAAUGACUCUUACGGCUACCAUUUUGUUAGGUUCUAUUUCUUCGAUUUCAGAAUAC--GUUUUCACAGGAAAUCGUGUU-----UGUUUUGGCUCAAAUAAU
-----((((((((((.((....((..((.((((........)))).))..))....))..........((((((--(.((((....)))).))))))-----)...)))))))))).... ( -23.60)
>DroEre_CAF1 9978 110 - 1
-----CUUGAGCUAAUGAUAAUGACUCUAACGGCUACCAUUUUGCCUGGUCGUAUUUCUUCGAUUUCGGAAUACCUUUUUUCACAGGAAAUCGUGUU-----UGUUUUGGCUUAAAUAAU
-----.(((((((((.((((((((((.....(((.........))).)))))).......(((((((.(((........)))....)))))))....-----)))))))))))))..... ( -24.50)
>DroYak_CAF1 9927 108 - 1
-----UUUGAGCUAAUGAUAAUGACUCUAACGUCCACCAUUUUGUCUGGUCGUAUUUCUUCGAUUUCGGAAUAC--UUUUUCACAGGAAAUCGUGUU-----UGUUAUGGCUUAAAUUAU
-----(((((((((.((((((..((....(((.(((..........))).)))........((((((.(((...--...)))....))))))))..)-----)))))))))))))).... ( -24.20)
>DroAna_CAF1 12367 110 - 1
UGUAUUCCGAGCUAAUGAUAAUGACUUCUCUGGCAUACAGUUUCCAUGAUCCUUUUUCAACUAGUUUGAAAUA---UUUUUCACAGGAAACUGAAACCACAGUCUCAUUGCUG-------
.........(((.(((((....((((....(((....((((((((.(((.....((((((.....))))))..---....)))..))))))))...))).)))))))))))).------- ( -25.70)
>consensus
_____UUUGAGCUAAUGAUAAUGACUCUUACGGCUACCAUUUUGUCUGGUCCUAUUUCUUCGAUUUCGGAAUAC__UUUUUCACAGGAAAUCGUGUU_____UGUUUUGGCUCAAAUAAU
......((((((((.................(.....)......................(((((((.(((........)))....)))))))..............))))))))..... (-10.10 = -11.38 +   1.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:48 2006