Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,045,228 – 8,045,336 |
Length | 108 |
Max. P | 0.754807 |
Location | 8,045,228 – 8,045,336 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.99 |
Mean single sequence MFE | -29.18 |
Consensus MFE | -16.52 |
Energy contribution | -16.44 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.34 |
Mean z-score | -2.10 |
Structure conservation index | 0.57 |
SVM decision value | 0.49 |
SVM RNA-class probability | 0.754807 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8045228 108 + 20766785 CAAUUUGUUGAUAGUAUUUUC----UGUUGUUGU----AAAAAUGCCCCGCUUGCAAGCGUGCAAUAACAGCAACAACAAGACCUGAAACAACAACAAU----AGGCGGCGAAUGCCGGC ....((((((...((.((.((----(((((((((----.....(((..((((....)))).)))......)))))))).)))...)).))..)))))).----.(.((((....)))).) ( -28.60) >DroSec_CAF1 10314 112 + 1 CAAUUUGUUGAUAGUAUUUUC----UGUUGUUGUUGUAAAAAAUGCCUCGCUUGCAGGCGUGCAACAACAGCAACAACGAGACCUGAAACAACAACACU----AGGCGGUGAAUGCCGGC ....((((((.(((..(((..----((((((((((((.....((((((.(....)))))))...))))))))))))..)))..)))...))))))....----.(.((((....)))).) ( -34.50) >DroEre_CAF1 8560 99 + 1 CAAUUUGUUGAUAGUAUUUUC----UGUUGUUGU----AAAAAUGCUCCGCUUGCAGGCGUGCAAC---------AACAAGACCUGAAACAACAAAACU----ACGCGGUGAAUGCCGGC ...(((((((....((..(..----(((((((((----(....(((.......)))....))))))---------))))..)..))...)))))))...----...((((....)))).. ( -27.30) >DroYak_CAF1 8437 112 + 1 CAAUUUGUUGAUAGUAUUUUUUUGUUGUUGUUGU----AAAAAUGCUCUGCUUGCAGGCGUGCAACAACAGCAACAACAAGACCUAAAACAACAAAACU----ACGCGGCGAUUGCCGGC ...(((((((.(((..((((.(((((((((((((----....((((.(((....)))))))...))))))))))))).)))).)))...)))))))...----...((((....)))).. ( -38.10) >DroAna_CAF1 11204 110 + 1 CAAUUUGUUGAUAGUGUUGU-----AGUUGUUGU---AAAAAAUGCUCCGCUUGCAAGCGCACUACAGCCCCAAAA--AAAACCUAAAACAACAAAAAUAAAUAAAUGGGGAAUGCCGGC ......((((.(((((((((-----((.((..((---(.....)))..)).)))))...))))))...(((((...--............................))))).....)))) ( -17.38) >consensus CAAUUUGUUGAUAGUAUUUUC____UGUUGUUGU____AAAAAUGCUCCGCUUGCAGGCGUGCAACAACAGCAACAACAAGACCUGAAACAACAAAACU____ACGCGGCGAAUGCCGGC ....((((((.(((..(((......(((((((((..............((((....)))).)))))))))........)))..)))...))))))...........((((....)))).. (-16.52 = -16.44 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:47 2006