Locus 216

Sequence ID 2R_DroMel_CAF1
Location 1,548,175 – 1,548,269
Length 94
Max. P 0.549948
window484

overview

Window 4

Location 1,548,175 – 1,548,269
Length 94
Sequences 5
Columns 98
Reading direction reverse
Mean pairwise identity 65.97
Mean single sequence MFE -21.54
Consensus MFE -11.28
Energy contribution -11.52
Covariance contribution 0.24
Combinations/Pair 1.47
Mean z-score -1.47
Structure conservation index 0.52
SVM decision value 0.03
SVM RNA-class probability 0.549948
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1548175 94 - 20766785
UCUACAUUUUUGGU---CCCUUUCU-GUAGUUUUGCAAUGCUGCUGAAUGGCUACGCCAAUUACUGUUAAUUGCAGUUGGGCUUGCAUUCUUGUAGUG
.(((((....((((---(...(((.-(((((........))))).))).))))).(((....(((((.....)))))..))).........))))).. ( -25.30)
>DroSec_CAF1 8255 97 - 1
UCGACUUUUUUGGUUUGCUCUUCCU-GCAGUUUUGCAAUGCUGCUGAAUGGCUGCGCCAAUUACUGUUAAUUACAGUUGGGUUUGCCCUCUUUUAGAG
.........(((((..(((.(((..-(((((........))))).))).)))...)))))..(((((.....))))).(((....))).......... ( -25.90)
>DroSim_CAF1 8322 97 - 1
UCGACUUUUUUGGUUUGCUCUUCCU-GCAGUUUUGCAAUGCUGCUGAAUGGCUGCGCCAAUUACUGUUAAUUGCAGUUGGGUUUGCCUUCUUGUAGAG
..(((....(((((..(((.(((..-(((((........))))).))).)))...))))).....)))..((((((..(((....)))..)))))).. ( -27.20)
>DroEre_CAF1 10292 74 - 1
-------UUAUUGA---------------GGUUUGUCUUCCCGCUGAAUGCCUGCACCAAUUACUGUUAAUUGCAGUUGGGUUUGCCCUCUUGUAC--
-------.....((---------------((...((...(((((.....))(((((..(((....)))...)))))..)))...))))))......-- ( -15.30)
>DroAna_CAF1 7811 80 - 1
-----------------CUUUUCUUCGUAGCUUU-UACUACUGUUAUUUAGCUUCGCCAUUUAAGGUUAAUUACAGUUACGUGUGUUCGGUUGUCGGC
-----------------.......((((((((..-(((.(((((...(((((((.........)))))))..))))).....)))...))))).))). ( -14.00)
>consensus
UC_AC_UUUUUGGU___CUCUUCCU_GCAGUUUUGCAAUGCUGCUGAAUGGCUGCGCCAAUUACUGUUAAUUGCAGUUGGGUUUGCCCUCUUGUAGAG
..........................((((((..(((....))).....))))))(((....(((((.....)))))..)))................ (-11.28 = -11.52 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:40 2006