Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,040,800 – 8,040,914 |
Length | 114 |
Max. P | 0.894711 |
Location | 8,040,800 – 8,040,914 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.62 |
Mean single sequence MFE | -28.94 |
Consensus MFE | -25.84 |
Energy contribution | -26.96 |
Covariance contribution | 1.12 |
Combinations/Pair | 1.06 |
Mean z-score | -1.46 |
Structure conservation index | 0.89 |
SVM decision value | 0.98 |
SVM RNA-class probability | 0.894711 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8040800 114 + 20766785 -----GCCAUGAAAUGCAUUUUCUGCCGCCAACAUGUUGAAAAUGCUGUCGCUUGUACAAUU-UUUGGCAUGCGACAAAUAUUUCCCACCAUAAGGGGGAGCCAGAACUUUAAUUUAUGG -----.(((((((..((((((((.((.........)).))))))))((((((.(((.((...-..))))).)))))).....(((((.((....)))))))............))))))) ( -33.60) >DroSec_CAF1 5789 113 + 1 -----GCCAUGAAAUGCAUUUUCUGCCGCCAACAUGUUGAAAAUGCUGUCGCUUGUACAAUU-UUUGGCAUGCGACAAAUAUUUCCCACCAAAAG-GGGAGCCAGAACUUUAAUUUAUGG -----.(((((((..((((((((.((.........)).))))))))((((((.(((.((...-..))))).))))))....((((((.......)-)))))............))))))) ( -31.00) >DroEre_CAF1 4439 113 + 1 -----GCCAUGAAAUGCAAUUUCUGCCGCCAACAUGUUGAAAAUGCUGUCGCUUGUACAAUU-UUUGGCAUGCGACAAAUAUUUCCCACCAUAAG-GGGAGCCACAACUUUAAUUUAUGG -----.(((((((..(((.....))).........((((.......((((((.(((.((...-..))))).))))))....((((((.......)-)))))...)))).....))))))) ( -27.30) >DroYak_CAF1 4096 113 + 1 -----GCCAUGAAAUGCAUUUUCUGCCGCCAACAUGUUGAAAAUGCUGUCGCUUGUACAGUU-UUUGGCAUGCGACAAAUAUUUCCCACCAAAAG-GGGAGCCAGAACUUUAAUUUAUGG -----.(((((((..((((((((.((.........)).))))))))((((((.(((.(((..-.)))))).))))))....((((((.......)-)))))............))))))) ( -30.70) >DroAna_CAF1 7226 118 + 1 AAACAAACAUGGAAUGCAAUUUCAGCCGCCAACAUGUGGAAAAUGCUGUAGCUUGUAAAUUUUUUUGGCAUGCGACAAAUAUUUCCCAC-AGAAG-GGGAGCCAGGACAUUAAUUUAUUG ...........((((..(((.((.(((.((..(.(((((.(((((.(((.((.(((.((.....)).))).)).)))..))))).))))-))..)-).).))...)).))).)))).... ( -22.10) >consensus _____GCCAUGAAAUGCAUUUUCUGCCGCCAACAUGUUGAAAAUGCUGUCGCUUGUACAAUU_UUUGGCAUGCGACAAAUAUUUCCCACCAAAAG_GGGAGCCAGAACUUUAAUUUAUGG ......(((((((..((((((((.((.........)).))))))))((((((.(((.(((....)))))).)))))).....(((((.........)))))............))))))) (-25.84 = -26.96 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:43 2006