Locus 2155

Sequence ID 2R_DroMel_CAF1
Location 8,036,700 – 8,036,820
Length 120
Max. P 0.563842
window3563

overview

Window 3

Location 8,036,700 – 8,036,820
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 87.50
Mean single sequence MFE -40.67
Consensus MFE -33.21
Energy contribution -33.90
Covariance contribution 0.69
Combinations/Pair 1.08
Mean z-score -1.43
Structure conservation index 0.82
SVM decision value 0.06
SVM RNA-class probability 0.563842
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8036700 120 + 20766785
AUCCCACUGCACGGAGUCAACGGAAACGAGUGCGUCCGGCAAACGAGGACGCCCGCCGACUCCAGCCACUCCCGGCGCUGCAAAGAAUCGACGGCUUAAUAACACCACUUCGAAUACCUC
.......(((((((((((..((....)).(.((((((.........)))))).)...)))))).(((......)))).)))).....((((.((..........))...))))....... ( -37.30)
>DroSec_CAF1 1819 120 + 1
AUCCCACUGCACGGAGUCAACGGAAACGAGUGCGUCCGGCAAACGAGGACGCCCUCCGACUCCAGCCACUCCCGGCGUUGCAAGGAGGCGACGGCUCAAUAACACCACUUCAAAUACCGC
.(((...(((((((((((...(....)(((.((((((.........)))))).))).)))))).(((......)))).)))).)))(((....)))........................ ( -40.60)
>DroEre_CAF1 1965 120 + 1
GUCCCACUGCUCGGAGUCCACGGAAACGAGUGCGUCCGUCAAACGAGGACGCCCAUCGACUCCGGCCACUCCCGGCGCUGCGAAGAAGCGGCGGUUCAAUAACACCACCUCUGAUACCCC
(..((...(((.(((((...((((..(((..((((((.((....))))))))...)))..))))...))))).)))(((((......)))))))..)....................... ( -46.00)
>DroYak_CAF1 1549 120 + 1
GUCCCAUUGCUCGGAGUCCACGGAAACGGGUGCGUCCGGCAAACGAGGGCGGCCAUCGACUCCGGCCACUCCCGGCGCUCCAAAGAAGCGAAGGCUCUAUAACACCACUUCUGAUACCCC
(((.....((.(((((((..((....))(((.(((((.........))))))))...)))))))(((......))))).....(((.((....)))))..............)))..... ( -38.80)
>consensus
AUCCCACUGCACGGAGUCAACGGAAACGAGUGCGUCCGGCAAACGAGGACGCCCACCGACUCCAGCCACUCCCGGCGCUGCAAAGAAGCGACGGCUCAAUAACACCACUUCUAAUACCCC
...((.((((..((((((..((....)).(.((((((.........)))))).)...)))))).(((......)))...........)))).)).......................... (-33.21 = -33.90 +   0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:38 2006