| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 8,026,127 – 8,026,232 |
| Length | 105 |
| Max. P | 0.629111 |
| Location | 8,026,127 – 8,026,232 |
|---|---|
| Length | 105 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 85.15 |
| Mean single sequence MFE | -32.40 |
| Consensus MFE | -24.33 |
| Energy contribution | -25.67 |
| Covariance contribution | 1.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.629111 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8026127 105 + 20766785 AGGGAAUCCUGGUCCAAACUGGAGUCCGAGUGGAAACGGUCACGUCCUGGAGA---------------AAAAAACGGCCAUAAACAAGACUGAUCUCAACCGGGAUAUAGGAAACUCACC .(((((((((((((((...(((...)))..))))...(((((.(((.((....---------------................)).))))))))....)))))))...(....))).)) ( -25.65) >DroSec_CAF1 39011 117 + 1 AGGGAAUCCUGGUCCAAACUCGAGUCCAAGUGGAAACGGCCACGUCCUGCAGAUGACAUGGCAAAA--AAAAACCGGCCAUA-ACAAGACGGAACUCGAUCGGGAUGUAGGAAACUCACC .(((..(((((((((....((((((((....(....)((((.((((.....))))....((.....--.....))))))...-.......)).))))))...)))).)))))..)))... ( -37.20) >DroSim_CAF1 39959 119 + 1 AGGGAAUCCUGGUCCAAACUCGAGUCCAAGUGGAAACGGACACGUCCUGCAGAUGACAUGGCAAAAAAAAAAACCGGCCAUA-ACAAGACGGAACUCGACCGGGAUGUAGGAAACUCACC .(((..(((((((((....((((((((..(((....)(((....))).))...((..(((((..............))))).-.))....)).))))))...)))).)))))..)))... ( -34.34) >consensus AGGGAAUCCUGGUCCAAACUCGAGUCCAAGUGGAAACGGACACGUCCUGCAGAUGACAUGGCAAAA__AAAAACCGGCCAUA_ACAAGACGGAACUCGACCGGGAUGUAGGAAACUCACC .(((..(((((((((....((((((((..(((........)))(((.((...(((.......................)))...)).)))))).)))))...)))).)))))..)))... (-24.33 = -25.67 + 1.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:37 2006