Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,022,585 – 8,022,679 |
Length | 94 |
Max. P | 0.757801 |
Location | 8,022,585 – 8,022,679 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 81.07 |
Mean single sequence MFE | -34.06 |
Consensus MFE | -23.42 |
Energy contribution | -23.82 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.18 |
Mean z-score | -1.82 |
Structure conservation index | 0.69 |
SVM decision value | 0.49 |
SVM RNA-class probability | 0.757801 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8022585 94 - 20766785 UGUACAUCUGUCCGCAGUAUUUACGCGCCUGUGU----GUGUGCGCGCUUGGGCAGAGGCUUACGCAGUGAAUUUGGGAGGGGCUUAAACCCCAAAAA .((...((((((((.((..(.(((((((....))----))))).)..)))))))))).))...(.(((.....))).).((((......))))..... ( -31.50) >DroSec_CAF1 34585 96 - 1 UUUACAUCUGUCCGCAGUAUUUACGCGCCUGUGUAU--GUGUGUGCGCUUGGGCAGAGGCUUACGCAGUGAAUUUGGGAGGUGCUUAAGCCCCUAAAA (((((.((((((((.(((...(((((((........--))))))).))))))))))).((....)).)))))((((((.(((......))))))))). ( -33.30) >DroSim_CAF1 35672 98 - 1 UUUACAUCUGUCCGCAGUAUUUACGCGCCUGUGUGUGUGUGUGUGCGCUUGGGCAGAGGCUUACGCAGUGAAUUUGGGAGGGGCUUAAGCCCCUAAAA (((((.((((((((..((((.(((((((......))))))).))))...)))))))).((....)).)))))......((((((....)))))).... ( -39.40) >DroEre_CAF1 33951 81 - 1 -----AGCUGUCCGCAGUAUCUGCGUGUGUG------------UGCGCUCGGGCAGAGGCUUACGCAGUGGCUUUGGGAGGGGCUCAAGCACCCAAAA -----.((..(.(((((...)))))((((((------------.((.(((.....))))).)))))))..))((((((....((....)).)))))). ( -29.20) >DroYak_CAF1 34349 88 - 1 ----CAUCGGUCCGCAGUAUCUACGUGUAUGU------GUGUCUGUGCUCGGGCAGAGGCUUACGCAGUGGAUUUGGGAGGGGCUCAAGCCCCAAAGA ----......(((.(((.(((((((((((...------((.(((((......))))).)).))))).))))))))))))(((((....)))))..... ( -36.90) >consensus U_UACAUCUGUCCGCAGUAUUUACGCGCCUGUGU____GUGUGUGCGCUUGGGCAGAGGCUUACGCAGUGAAUUUGGGAGGGGCUUAAGCCCCAAAAA ..........(((.(((.((((((((((..............))))((.(((((....))))).)).))))))))))))(((((....)))))..... (-23.42 = -23.82 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:36 2006