Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,017,104 – 8,017,195 |
Length | 91 |
Max. P | 0.988969 |
Location | 8,017,104 – 8,017,195 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 81.21 |
Mean single sequence MFE | -21.36 |
Consensus MFE | -13.34 |
Energy contribution | -13.62 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.28 |
Mean z-score | -2.91 |
Structure conservation index | 0.62 |
SVM decision value | 2.14 |
SVM RNA-class probability | 0.988969 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8017104 91 - 20766785 UAACUCAAAAACACCUAAAGUAAGUGUGCUUUUCAUAGCAUAUCAAAGAAAGAUUCUAGCCAUCUUUUUAGGUGGUUGAGAUUCAAUGAAA ...(((((...((((((......(((((((......)))))))....(((((((.......))))))))))))).)))))........... ( -24.30) >DroSec_CAF1 31249 91 - 1 CAACUCAAAAAUGCUUACUUUAGGUGUGCUUCUCUUAGCAUAUCAAAGAAAAACUCUAGCCAUCUUCUUAGGUGGUUAAGAACCAAUGAAA ....(((..........((((.((((((((......))))))))))))......(((((((((((....)))))))).))).....))).. ( -24.10) >DroSim_CAF1 32106 91 - 1 CAACUCAAAAAUGCUUACUUUAGGUGUGCUUCUCUUAGCAUAUCAAAGAAAAACUCUAGCCAUCUUCUUAGGUGGUUGAGAACCAAUGAAA ....(((..........((((.((((((((......)))))))))))).....(((.((((((((....)))))))))))......))).. ( -26.10) >DroEre_CAF1 30963 91 - 1 CAACUCAAAAACGCUUACUUUAAGUGUGCUAUUCUUAAUUUAUCGAAGAAAGAUAUAAGCCAUCUUCUUAGGUGGUCGAGAACCACUGAAA ....(((...(((((((...)))))))....(((((....((((.......))))...(((((((....))))))).)))))....))).. ( -17.70) >DroYak_CAF1 31188 90 - 1 CAACUCAAAAACGCUUCCAUUAAGUGGGCUAUUCUUAAUUUACCAUAAAAAGAUCUUU-UCAACUUCUUAGUUGGUUGAGAACCACUGAAA ......................(((((.....((((.............))))..(((-((((((........)))))))))))))).... ( -14.62) >consensus CAACUCAAAAACGCUUACUUUAAGUGUGCUUUUCUUAGCAUAUCAAAGAAAGAUUCUAGCCAUCUUCUUAGGUGGUUGAGAACCAAUGAAA ...(((.................(((((((......)))))))..............((((((((....)))))))))))........... (-13.34 = -13.62 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:35 2006