Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,014,602 – 8,014,692 |
Length | 90 |
Max. P | 0.998925 |
Location | 8,014,602 – 8,014,692 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 69.61 |
Mean single sequence MFE | -21.74 |
Consensus MFE | -11.72 |
Energy contribution | -14.28 |
Covariance contribution | 2.56 |
Combinations/Pair | 1.17 |
Mean z-score | -2.66 |
Structure conservation index | 0.54 |
SVM decision value | 3.28 |
SVM RNA-class probability | 0.998925 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8014602 90 + 20766785 --------------GCACACAUUCCAAACGUGUGUGAAAA-------AUGGGAGAGUAAGUCUGGCUCUUAAAUAAAUAAAGUUAUACAAGUCCUAGGCUUACAUUAACCA --------------.(((((((.......)))))))....-------.(((..((((((((((((..(((..((((......))))..)))..)))))))))).))..))) ( -26.20) >DroSec_CAF1 28755 88 + 1 --------------ACACACAUUUCAAAUGUGUUUGAAAA-------AUGGG--AGUAAGUCUGGCUCUUAAAUAAAUAAAGUUAUAUAAGCUCUAGGCUUACAUUAACUA --------------...((..(((((((....))))))).-------.))..--.((((((((((..((((.((((......)))).))))..))))))))))........ ( -21.80) >DroSim_CAF1 29578 90 + 1 --------------ACACACAUUUCGAAUGUGUGUGAAAA-------AUGGGAGAGUAAGUCUGGCUCUUAAAUACAUAAAGUUAUACAAGUUCUAGGCUUACAUUAACCA --------------((((((((.....)))))))).....-------.(((..((((((((((((..(((....((.....)).....)))..)))))))))).))..))) ( -26.50) >DroEre_CAF1 28493 105 + 1 UGGAAGUUAGACAAACACAUACUCCAAACGUGUGUC-----CCUUCCAUGAAUUUUUCAGUC-AACUCUUAUAUAAAUGAAGUUAUACAAGUUCUAAGCUUACGUUAACUA ((((((...(((..((((...........)))))))-----.))))))..............-.................(((((...((((.....))))....))))). ( -15.00) >DroYak_CAF1 28654 110 + 1 UGAGAGUUAGGCAAGCACACACUCUAAAAGUGGGAGAAAGUAAGACUAUGGCUUAUUGAGUA-AACUCUUAAAUAAAUAAAGUUAAACAAGUUCAAGGCUUACAUUAACUA ((((((((..((.........((((.......))))..((((((.(....)))))))..)).-)))))))).........((((((..((((.....))))...)))))). ( -19.20) >consensus ______________ACACACAUUCCAAACGUGUGUGAAAA_______AUGGGAGAGUAAGUCUGGCUCUUAAAUAAAUAAAGUUAUACAAGUUCUAGGCUUACAUUAACUA ...............(((((((.......)))))))...................((((((((((..(((..((((......))))..)))..))))))))))........ (-11.72 = -14.28 + 2.56)
Location | 8,014,602 – 8,014,692 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 69.61 |
Mean single sequence MFE | -20.29 |
Consensus MFE | -6.44 |
Energy contribution | -8.12 |
Covariance contribution | 1.68 |
Combinations/Pair | 1.22 |
Mean z-score | -1.80 |
Structure conservation index | 0.32 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.642918 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8014602 90 - 20766785 UGGUUAAUGUAAGCCUAGGACUUGUAUAACUUUAUUUAUUUAAGAGCCAGACUUACUCUCCCAU-------UUUUCACACACGUUUGGAAUGUGUGC-------------- (((.....(((((.((.((.((((.((((......)))).))))..)))).)))))....))).-------......(((((((.....))))))).-------------- ( -18.90) >DroSec_CAF1 28755 88 - 1 UAGUUAAUGUAAGCCUAGAGCUUAUAUAACUUUAUUUAUUUAAGAGCCAGACUUACU--CCCAU-------UUUUCAAACACAUUUGAAAUGUGUGU-------------- ........(((((.((.(..((((.((((......)))).))))..).)).))))).--..(((-------.(((((((....))))))).)))...-------------- ( -15.80) >DroSim_CAF1 29578 90 - 1 UGGUUAAUGUAAGCCUAGAACUUGUAUAACUUUAUGUAUUUAAGAGCCAGACUUACUCUCCCAU-------UUUUCACACACAUUCGAAAUGUGUGU-------------- (((.....(((((.((.(..((((.(((.(.....)))).))))..).)).)))))....))).-------.....((((((((.....))))))))-------------- ( -18.30) >DroEre_CAF1 28493 105 - 1 UAGUUAACGUAAGCUUAGAACUUGUAUAACUUCAUUUAUAUAAGAGUU-GACUGAAAAAUUCAUGGAAGG-----GACACACGUUUGGAGUAUGUGUUUGUCUAACUUCCA (((((((((....)......(((((((((......))))))))).)))-))))).........(((((((-----(((((((((.......))))))..))))..)))))) ( -27.70) >DroYak_CAF1 28654 110 - 1 UAGUUAAUGUAAGCCUUGAACUUGUUUAACUUUAUUUAUUUAAGAGUU-UACUCAAUAAGCCAUAGUCUUACUUUCUCCCACUUUUAGAGUGUGUGCUUGCCUAACUCUCA .(((((..((((((((((((...((........))...)))))).)))-)))....(((((((((.(((.................))).)))).)))))..))))).... ( -20.73) >consensus UAGUUAAUGUAAGCCUAGAACUUGUAUAACUUUAUUUAUUUAAGAGCCAGACUUACUAACCCAU_______UUUUCACACACAUUUGGAAUGUGUGU______________ ........(((((.((.(..((((.((((......)))).))))..).)).))))).....................(((((((.....)))))))............... ( -6.44 = -8.12 + 1.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:34 2006