| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 8,013,598 – 8,013,691 |
| Length | 93 |
| Max. P | 0.839622 |
| Location | 8,013,598 – 8,013,691 |
|---|---|
| Length | 93 |
| Sequences | 3 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 87.92 |
| Mean single sequence MFE | -27.17 |
| Consensus MFE | -18.79 |
| Energy contribution | -20.23 |
| Covariance contribution | 1.45 |
| Combinations/Pair | 1.03 |
| Mean z-score | -3.16 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.839622 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8013598 93 - 20766785 CACACACACACAUUUCAAAUCGGC-UUGGAGAA------UGUGUGUGUUAGCCUAAUAAUAUUCCACAUUUCGCCUUUUGUCUAAAGAGCUAAUAUUAUG .(((((((((..((((((......-))))))..------))))))))).......((((((((.........((((((.....)))).)).)))))))). ( -20.10) >DroSec_CAF1 27795 98 - 1 CACACACACACACUUCAAAUCAGCUUUGGAGAA--CGUGUGUGUGUGUUAGCCUAAUAAUAUUCCAAAUUGGGCCUUUUGUCCAAAGAGGUAAUAUUAUG (((((((((((.(((((((.....)))))))..--.)))))))))))........((((((((((...((((((.....))))))...)).)))))))). ( -35.80) >DroSim_CAF1 28618 98 - 1 CACA--CACACACUUCAAAUCUGGUUUGGAGAAUGCGCGUGUGUGUGUUAGCCUAAUAAUAUUCCAAAUUUGGCCUUUUGUCUAAAGAGGUAAUAUUAUG ((((--(((((.((((((((...)))))))).......)))))))))........((((((((((...(((((.(....).)))))..)).)))))))). ( -25.60) >consensus CACACACACACACUUCAAAUCAGCUUUGGAGAA__CG_GUGUGUGUGUUAGCCUAAUAAUAUUCCAAAUUUGGCCUUUUGUCUAAAGAGGUAAUAUUAUG .((((((((((.(((((((.....))))))).......)))))))))).......((((((((.........(((((((.....))))))))))))))). (-18.79 = -20.23 + 1.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:32 2006