Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,543,755 – 1,543,938 |
Length | 183 |
Max. P | 0.689393 |
Location | 1,543,755 – 1,543,868 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 88.78 |
Mean single sequence MFE | -39.54 |
Consensus MFE | -27.30 |
Energy contribution | -28.66 |
Covariance contribution | 1.36 |
Combinations/Pair | 1.16 |
Mean z-score | -1.95 |
Structure conservation index | 0.69 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.557384 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1543755 113 + 20766785 CCACACACGUUAGAACAAAAUGCUGGCUCGCCGUGAGUCAGCGAG---GAACUAGUUCGCGGCCGAACCAAAACAUUGAACAGCUGAGUCAGCGCAGCGG-ACAGUUCGCACGGAA-U ((..................(((((((((.....)))))))))..---(((((.((((((.((.....(((....)))....((((...)))))).))))-)))))))....))..-. ( -36.20) >DroSec_CAF1 4174 116 + 1 CCACUCACGUUAGAACAAAAUGCUGGCUCCCCGUGAGUCAGCGAGCGCGAACUAGUUCGCGGCCGAACCAAAACAUUGAACAGCUGAGUCAGCGCAGCGG-GCAGUUCGCACGGAA-U ((.(((..((....)).....((((((((.....))))))))))).(((((((.((((((.((.....(((....)))....((((...)))))).))))-)))))))))..))..-. ( -42.90) >DroSim_CAF1 4180 117 + 1 CCACUCACGUUAGAACAAAAUGCUGGCUCCCCGUGAGUCAGCGAGCGCGAACUAGUUCGCGGCCGAACCAAAACAUUGAACAGCUGAGUCAGCGCAGCGCUGCCCGCUGCACGGAA-U ...(((..((....)).....((((((((.....)))))))))))((((((....)))))).(((.................((((...))))((((((.....)))))).)))..-. ( -41.90) >DroEre_CAF1 5789 114 + 1 CCACUCACGUUAGAACAAAAUGCUAGCUCCCCGUGAGUCAGCGGGGGCGAACUAGUUCGCUGGCGAACCAAAACAUUGAACAGCUGAGUCAGCG--GCGG-GCAGUUCGCACAAGA-A ........(((((.........))))).((((((......))))))(((((((.(((((((((....)).............((((...)))))--))))-)))))))))......-. ( -40.50) >DroYak_CAF1 6125 117 + 1 CCACUCACGUUAGAACAAAAUGCUAGCUCGCCGUGAGUUAGUGAAGGCGAACUAGUUCGCGGCCGAACCAAAACAUUGAACAGCUGAGUCAGCGCUGCGA-GCAGAUCGCACAAAAUA .....................((((((((.....))))))))....((((.((.(((((((((.....(((....)))....((((...)))))))))))-)))).))))........ ( -36.20) >consensus CCACUCACGUUAGAACAAAAUGCUGGCUCCCCGUGAGUCAGCGAGCGCGAACUAGUUCGCGGCCGAACCAAAACAUUGAACAGCUGAGUCAGCGCAGCGG_GCAGUUCGCACGGAA_U ....................(((((((((.....)))))))))...(((((((.((((((.((.....(((....)))....((((...)))))).)))).)))))))))........ (-27.30 = -28.66 + 1.36)
Location | 1,543,832 – 1,543,938 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 79.36 |
Mean single sequence MFE | -36.04 |
Consensus MFE | -23.70 |
Energy contribution | -24.62 |
Covariance contribution | 0.92 |
Combinations/Pair | 1.10 |
Mean z-score | -1.71 |
Structure conservation index | 0.66 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.689393 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1543832 106 + 20766785 CAGCUGAGUCAGCGCAGCGG-ACAGUUCGCACGGAA-UGAGCACCUACCUGUUCGGAUUCGGCGUGGGACAGGAAACUGCCCCAAUUCCCAUG----------ACCAACCAAAGUCAG ..((((((((.(((.(((..-...))))))......-((((((......)))))))))))))).((((.(((....))).)))).......((----------((........)))). ( -38.60) >DroSec_CAF1 4254 112 + 1 CAGCUGAGUCAGCGCAGCGG-GCAGUUCGCACGGAA-UGAGCAC----CUGUUCGACUUCGGCGUGGGACAGGAAACUGCCCCAAUUCCCAUGAAUCCCCACGACCAACCAAAGCCAG ..((((((((.(((.(((..-...))))))......-.((((..----..))))))))).((((((((.(((....))).....((((....)))).)))))).))......)))... ( -36.40) >DroSim_CAF1 4260 113 + 1 CAGCUGAGUCAGCGCAGCGCUGCCCGCUGCACGGAA-UGAGCAC----CUGUUCGACUUCGGCGCGGGACAGGAAACUGCCCCAAUUCCCAUGAAUCCCCAUGUCCAACCAAAGCCAG ..((((((((.(.((((((.....)))))).)....-.((((..----..))))))).)))))(((((.(((....))).)))......((((......))))..........))... ( -42.00) >DroEre_CAF1 5869 97 + 1 CAGCUGAGUCAGCG--GCGG-GCAGUUCGCACAAGA-AGAGCAC----CUGU------UCGGCGUGGGACAGGAGACUGCCCCAAUUCCCACGAAA------GGACAACCAAA-CCAA ..((((...))))(--(.((-((..(((......))-)..)).)----)(((------((..((((((((((....))).......)))))))...------))))).))...-.... ( -33.91) >DroYak_CAF1 6205 100 + 1 CAGCUGAGUCAGCGCUGCGA-GCAGAUCGCACAAAAUAAAGCAC----CUGU------UCGGCGUGGGACAGGAAACUGCCCCAAUUCCCAUGAAU------GUACAACCAAA-CCAG ..((((((.(((.(((((((-.....)))).........)))..----))))------))))).((((.(((....))).))))((((....))))------...........-.... ( -29.30) >consensus CAGCUGAGUCAGCGCAGCGG_GCAGUUCGCACGGAA_UGAGCAC____CUGUUCG__UUCGGCGUGGGACAGGAAACUGCCCCAAUUCCCAUGAAU______GACCAACCAAAGCCAG ..(((((.........((((......))))........(((((......)))))....))))).((((.(((....))).)))).................................. (-23.70 = -24.62 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:39 2006