Locus 2149

Sequence ID 2R_DroMel_CAF1
Location 8,009,905 – 8,009,996
Length 91
Max. P 0.993078
window3556

overview

Window 6

Location 8,009,905 – 8,009,996
Length 91
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 75.70
Mean single sequence MFE -26.93
Consensus MFE -12.93
Energy contribution -12.40
Covariance contribution -0.53
Combinations/Pair 1.24
Mean z-score -2.89
Structure conservation index 0.48
SVM decision value 2.37
SVM RNA-class probability 0.993078
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8009905 91 + 20766785
UU--------CGUGCAUUUCAAUUAGCUGCUAACGGCUGGCAAUUAUGAUGAUGAUUGCAUUCGGUUG---CUUUAAAAUGUGGCCGAUAUGCAAAUGUUAU
..--------..(((((.((...((((((....))))))((((((((....))))))))....(((..---(........)..))))).)))))........ ( -28.90)
>DroPse_CAF1 23644 93 + 1
CA--------CAUGAAUUUCAAUUAGUUGCCAGCGGCUGGCAAUUAUAAUGAUGAUUGCAUAUGGCCAG-ACCAUUAAACGUGGCCAAAAUGCAAAUUUUCA
..--------..((((..(((..((((((((((...))))))))))...)))...((((((.((((((.-...........))))))..))))))...)))) ( -28.20)
>DroEre_CAF1 23893 99 + 1
UUCGUCCAUUCGUGCAUUUCAAUUAGUUGCUAACGGCUGGCAAUUAUGAUGAUGAUUGCAUUCGGUUG---CUUUAAAAUGUGCACGAUAUGCAAAUGGUAU
.....((((((((((((.....((((..((.(((.(...((((((((....))))))))...).))))---).))))...)))))))).......))))... ( -25.71)
>DroYak_CAF1 24037 91 + 1
UU--------CGUGCAUUUCAAUUAGUUGCUAACGGCUGGCAAUUAUGAUGAUGAUUGCAUUCGCUUG---CCUUAAAAUGUGGCCGAUAUGCAAAUGGUAU
.(--------(((.((((.....(((((((((.....))))))))).))))))))(((((((((...(---((.........)))))).))))))....... ( -23.50)
>DroAna_CAF1 27192 93 + 1
UA--------CGUGAAUUUCAAUUAGUCCCUAACGGUGGGCCAUUAU-ACAAUGAUGGCAUACGUUUGGUGCCAUUAAGAGUACCAGAUAUGCAAAUGUCCC
.(--------((((............((((....)).))((((((((-...)))))))).))))).((((((........))))))(((((....))))).. ( -24.70)
>DroPer_CAF1 22065 88 + 1
CA--------CAUGAAUUUCAAUUAGUUGCCAGCGGCUGGCAAUUAUAAUGAUGAUUGCAUAUGGC------CAUUAAACGUGGCCAAAAUGCAAAUUUUCA
..--------..((((..(((..((((((((((...))))))))))...)))...((((((.((((------(((.....)))))))..))))))...)))) ( -30.60)
>consensus
UA________CGUGAAUUUCAAUUAGUUGCUAACGGCUGGCAAUUAUGAUGAUGAUUGCAUACGGUUG___CCAUAAAAUGUGGCCGAUAUGCAAAUGUUAU
..............(((((((..((((((....))))))((((((((....))))))))...............................)).))))).... (-12.93 = -12.40 +  -0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:31 2006