Locus 2148

Sequence ID 2R_DroMel_CAF1
Location 8,008,646 – 8,008,736
Length 90
Max. P 0.812420
window3555

overview

Window 5

Location 8,008,646 – 8,008,736
Length 90
Sequences 4
Columns 104
Reading direction reverse
Mean pairwise identity 79.62
Mean single sequence MFE -23.50
Consensus MFE -12.20
Energy contribution -11.82
Covariance contribution -0.37
Combinations/Pair 1.23
Mean z-score -2.50
Structure conservation index 0.52
SVM decision value 0.65
SVM RNA-class probability 0.812420
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8008646 90 - 20766785
ACC---AUGUUGAUUUCCAGAGGGAAACUUUAAAUGGAAAGCAAUUGUG-GGGAAAUUAAUGAGGUUGAUACGUAAUUU----------UAUCUAUUUCGCAUU
.((---((((((.((((((((((....))))...)))))).))).))))-).(((((..(((((((((.....))))))----------)))..)))))..... ( -25.00)
>DroSec_CAF1 22869 90 - 1
ACC---AUGUUGAUUUCCAGAGGGAAACUUUAAAUGGAAAGCAAUUGGGGGGGAAAUUAAUUUGGUUGAUA-GUAAUUU----------UAUCUAUUUCACCUU
.((---(.((((.((((((((((....))))...)))))).)))))))(((((((((..((..(((((...-.))))).----------.))..))))).)))) ( -24.10)
>DroSim_CAF1 23777 90 - 1
ACC---AUGUUGAUUUCCAGAGGGAAACUUUAAAUGGAAAGCAAUUGGGGGGGAAAUUAAUGUGGUUGAUA-GUAAUUU----------UAUCCAAUUCACCUU
.((---(.((((.((((((((((....))))...)))))).)))))))((..(((((((.(((.....)))-.))))))----------)..)).......... ( -23.60)
>DroYak_CAF1 22746 99 - 1
AGCAAAAUGGUGAUUUCCAUGGGGAAACUUUAAAUGGAAAGCAAUCGG-GUGGAGGUUGAUGGGAUUGAUACAUAACUUUAUACAAGAAUAUCUAUUUCA----
..((...((((..(((((((.((....))....)))))))...)))).-.))(((((.((((...((((((........))).)))...)))).))))).---- ( -21.30)
>consensus
ACC___AUGUUGAUUUCCAGAGGGAAACUUUAAAUGGAAAGCAAUUGGGGGGGAAAUUAAUGUGGUUGAUA_GUAAUUU__________UAUCUAUUUCACCUU
.((.....((((.((((((((((....))))...)))))).))))....))....((((((...)))))).................................. (-12.20 = -11.82 +  -0.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:30 2006