Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,006,840 – 8,006,954 |
Length | 114 |
Max. P | 0.934148 |
Location | 8,006,840 – 8,006,954 |
---|---|
Length | 114 |
Sequences | 6 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 77.96 |
Mean single sequence MFE | -33.95 |
Consensus MFE | -18.67 |
Energy contribution | -20.42 |
Covariance contribution | 1.75 |
Combinations/Pair | 1.14 |
Mean z-score | -2.33 |
Structure conservation index | 0.55 |
SVM decision value | 1.23 |
SVM RNA-class probability | 0.934148 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8006840 114 + 20766785 GUCGUGUCGCAAGACAAUGGGCAACCAUGUCGACACCACCACCAGGCCUGUCCCCACCGAAACAGUCCCGCCCACCCUGUCAUGGGGGACAGGCCACAUCGAACUUUAAUCAAU ((((((((....))))((((....))))..))))..........(((((((((((......((((...........))))....)))))))))))................... ( -46.20) >DroSec_CAF1 21086 114 + 1 GUCGUGUCGCAAGACAAUGGGCCACCAUGUCGACACCACCACCAGACCUGCCCCCACUGAAACAGUUCCGCCCACCCUGCCAUGGGGGACAGGACACAUCGAACUUUAAUCAAU ((((((((....))))((((....))))..))))............((((((((((.((...(((...........))).)))))))).))))..................... ( -34.70) >DroSim_CAF1 21738 114 + 1 GUCGUGUCGCAAGACAAUGGGCCACCAUGUCGACACCACCACCAGACCUGCCCCCACUGAAACAGUUCCGCCCACCCUGUCAUGGGGGACAGGACACAUCGAACUUUAAUCAAU ((((((((....))))((((....))))..))))............((((((((((.(((..(((...........)))))))))))).))))..................... ( -36.50) >DroEre_CAF1 20945 106 + 1 GUCGUGUCGCAAGACAAUGGGCCACCAUAUCGACACCCCAGGCC----UGCCUCCA----UAGCGUUCCGCCCACCCUGUCAUGGGGGACAGGACACAUCAUACUUUAAUCAAU ((((((((....))))((((....))))..))))......(.((----((((((((----(..((............))..))))))).)))).)................... ( -33.40) >DroYak_CAF1 21038 110 + 1 GUCGUGUCGCAAGAAAAUGGGCCACCAUAUCGACACCCCUAACCGCCACACCCCCA----AGCCGUUCCGCCCACCCUGUCAUGGGGGCCAGGACACAUCGAACUUUAAUCAAU ((((..((....))..((((....))))..))))......................----....((((.((((.((.......))))))..))))................... ( -23.60) >DroAna_CAF1 24614 94 + 1 GUCAUGGCGGAAGACAAUGGGCC--------------------GGGCCCUCCUUUACCGUUACGCUUCAGUUUGUCCUGUCAUGGGCGACAGGACACAUCGAACUUUAAUCAAU ....((((((.(((....((((.--------------------..))))...))).))))))...(((.((.(((((((((......))))))))).)).)))........... ( -29.30) >consensus GUCGUGUCGCAAGACAAUGGGCCACCAUGUCGACACCACCACCAGACCUGCCCCCAC_GAAACAGUUCCGCCCACCCUGUCAUGGGGGACAGGACACAUCGAACUUUAAUCAAU ((((((((....))))((((....))))..))))..............................((((.(.((.(((......))))).).))))................... (-18.67 = -20.42 + 1.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:28 2006