| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 7,991,885 – 7,991,988 |
| Length | 103 |
| Max. P | 0.803762 |
| Location | 7,991,885 – 7,991,988 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 74.72 |
| Mean single sequence MFE | -39.49 |
| Consensus MFE | -16.22 |
| Energy contribution | -17.25 |
| Covariance contribution | 1.03 |
| Combinations/Pair | 1.43 |
| Mean z-score | -2.15 |
| Structure conservation index | 0.41 |
| SVM decision value | 0.63 |
| SVM RNA-class probability | 0.803762 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7991885 103 - 20766785 CGAAGCCAGUCGCGAUUUCGCAUCCCCUGUUUACCUUUUG----GGGACCCGGGCAAAAGGG--GGCAUAAUGAAUCGG------GGGGGUGCGAGUGGAGCUGGCGAAUGAAUA ....((((((..((...((((((((((((((((((....)----)(..(((........)))--..)....)))))..)------)))))))))).))..))))))......... ( -41.40) >DroSec_CAF1 7668 102 - 1 CGAAGCCAGUCGCGAUUUCGCAUCCCCUGUUUACGUUUUG----GGGACCCGUGCCAAAGGG--GGUCUAAUGAAUCGG------G-GGGUGCGAGUGGAUCUGGCGAAUGAAUA ....(((((((.((...((((((((((((.((.((((...----.((((((.(......).)--))))))))))).)))------)-)))))))).)))).)))))......... ( -45.40) >DroSim_CAF1 7583 104 - 1 CGAAGCCAGUCGCGAUUUCGCAUCCCCUGUUUACCUUUUG----GGGACCCGGGCCAAAGGGGGGGCCUAAUGAAUCGG------G-GGGUGCGAGUGGAGCUGGCGAAUGAAUA ....((((((..((...((((((((((((((((......(----(....))(((((........)))))..)))).)))------)-)))))))).))..))))))......... ( -47.00) >DroEre_CAF1 7439 97 - 1 CGAAGCCAGUCGCGAUUUUGUAUACCCUGUUUGCCUUUUG----GGGACCCGGG-AAGAGGG--GGCCUAAUGAAUCGG------G-GUGUGCGAGUGGAGCUGGCGA----AUA ....((((((..((...((((((((((((........(((----((..(((...-....)))--..))))).....)))------)-)))))))).))..))))))..----... ( -40.82) >DroYak_CAF1 7332 103 - 1 CGAAGACAGUCGCGAUUUCGUAUCCCCUGUUUGCCUUUUG----GGGACCCGGG-AAUCGGG--GGCCUAAUGAAUCGGGGACGGG-GAGUGCGGGUGAUGCUGGCGC----AUA ......((.((((.(((((.(.(((((.((((.....(((----((..((((..-...))))--..))))).)))).))))).).)-)))))))).))((((....))----)). ( -39.70) >DroPer_CAF1 7712 92 - 1 CGAACAGUGUCUAUUUUUUGUACGUACUGUUUAUUUUUGGUUUCUGGAU-GGGGCGUAUGGG--GGUAUAG---UUCGG------G-GGAUGUG-GUGCCGCUGGC--------- .((((((((..(((.....)))..)))))))).......((..(.....-)..))....((.--(((((.(---((...------.-.)))...-))))).))...--------- ( -22.60) >consensus CGAAGCCAGUCGCGAUUUCGCAUCCCCUGUUUACCUUUUG____GGGACCCGGGCAAAAGGG__GGCCUAAUGAAUCGG______G_GGGUGCGAGUGGAGCUGGCGA____AUA ....((((((......(((((((((........((.........(((.(((........)))....)))........))........)))))))))....))))))......... (-16.22 = -17.25 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:27 2006