Locus 2144

Sequence ID 2R_DroMel_CAF1
Location 7,991,528 – 7,991,626
Length 98
Max. P 0.738693
window3551

overview

Window 1

Location 7,991,528 – 7,991,626
Length 98
Sequences 6
Columns 98
Reading direction forward
Mean pairwise identity 90.27
Mean single sequence MFE -29.43
Consensus MFE -23.11
Energy contribution -23.42
Covariance contribution 0.31
Combinations/Pair 1.16
Mean z-score -2.79
Structure conservation index 0.79
SVM decision value 0.44
SVM RNA-class probability 0.738693
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7991528 98 + 20766785
CGCCUCACCACGAUUUUAUAUCAUAUAUGCAAAUGUGUUUGCUCCAUUUGCAUGUUUACGACUCGGAUUAUCCGGAUAAAGUGGGCCUCGAGGUGCUU
((((((.(((((((.....)))..(((((((((((.(......)))))))))))).......((((.....)))).....)))).....))))))... ( -30.00)
>DroSec_CAF1 7307 98 + 1
CGCCUCCCCACGAUUUUAUAUCAUAUAUGCAAAUGUGUUUGCUCCAUUUGCAUGUUUACGACUCGGAUUAUCCGGAUAAAGUGGGCCUCGAGGUGCUU
((((((((((((((.....)))..(((((((((((.(......)))))))))))).......((((.....)))).....)))))....))))))... ( -32.60)
>DroSim_CAF1 7222 98 + 1
CGCCUCCCCACGAUUUUAUAUCAUAUAUGCAAAUGUGUUUGCUCCAUUUGCAUGUUUACGACUCGGAUUAUCCGGAUAAAGUGGGCCUCGAGGUGCUU
((((((((((((((.....)))..(((((((((((.(......)))))))))))).......((((.....)))).....)))))....))))))... ( -32.60)
>DroEre_CAF1 7053 98 + 1
CACCUACCCACGAUUUUAUAUCUUAUAUGCAAAUGUGUUUGCUCCAUUUGCAUAUUUACGACUCGGAUUAUCCGGAUAAAGAGGGCCUCGAGGUGCUU
(((((.(((...............(((((((((((.(......)))))))))))).......((((.....)))).......))).....)))))... ( -26.00)
>DroYak_CAF1 6966 97 + 1
CGCCUACCCUCGAUUUUAUAUCUUAUAUGCAAAUGUGUUUGCUCCAUUUGCAUGUUUACGACUCGGAUUAUCCGGAUAAAG-GGGCCUUGAGGUGCUU
(((((.((((..(((.........(((((((((((.(......))))))))))))........(((.....))))))..))-))......)))))... ( -26.80)
>DroAna_CAF1 7118 92 + 1
CGCCUCAGUUGGAUUUUAUCUCAUAUAUGCAAAUGUUUGUGCUCCAUUUGCAUGUUUACGAUUCGUUUCAGCCGGA------GCGCCUCGAGGUGCUU
((((((.((((((....(((....(((((((((((.........)))))))))))....)))....)))))).((.------...))..))))))... ( -28.60)
>consensus
CGCCUCCCCACGAUUUUAUAUCAUAUAUGCAAAUGUGUUUGCUCCAUUUGCAUGUUUACGACUCGGAUUAUCCGGAUAAAGUGGGCCUCGAGGUGCUU
(((((((((...............(((((((((((.(......)))))))))))).......((((.....)))).......)))....))))))... (-23.11 = -23.42 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:26 2006