Locus 2143

Sequence ID 2R_DroMel_CAF1
Location 7,990,868 – 7,990,958
Length 90
Max. P 0.784309
window3550

overview

Window 0

Location 7,990,868 – 7,990,958
Length 90
Sequences 6
Columns 109
Reading direction forward
Mean pairwise identity 81.25
Mean single sequence MFE -29.11
Consensus MFE -19.86
Energy contribution -21.08
Covariance contribution 1.22
Combinations/Pair 1.12
Mean z-score -1.92
Structure conservation index 0.68
SVM decision value 0.57
SVM RNA-class probability 0.784309
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7990868 90 + 20766785
AACAAAUUAGGCAAAUACCGGGCUGCCCGGGGCUACAAAAACAUUCAGC----------------AAAGCGCCACGGGUGGCGCA-CUGGGUCCAAAUCCGUAACCA--
.................(((((...)))))((.(((.............----------------...((((((....)))))).-..((((....))))))).)).-- ( -28.10)
>DroSec_CAF1 6655 90 + 1
AACAAAUUGGGCAAAUAUCGGGCUGCCCGGGGCUACAAAAACAUUCAGC----------------AAAGCGCCACGGGUGGCGCA-CUGGGUCCAAAUCCGUAACCA--
......((((((...((..(.((..(((((((((...............----------------..))).)).))))..)).).-.)).))))))...........-- ( -28.33)
>DroSim_CAF1 6566 90 + 1
AACAAAUUAGGCAAAUACCGGGCUGCCCGGGGCAACAAAAACAUUCAGC----------------AAAGCGCCACGGGUGGCGCA-CUGGGUCCAAAUCCGUAACCA--
..........((.....(((((...)))))(....)...........))----------------...((((((....)))))).-..((((....)))).......-- ( -26.70)
>DroEre_CAF1 6353 90 + 1
AACAAAUUGGGCAAAUACCGGGUUGCCCGGGGCCACAAAAACAUUCCGC----------------AGAGCGCCACGGGUGGCGCA-CGGGGUCCAAAUCCGUAACCA--
......((((((.....(((((...))))).))).)))...........----------------...((((((....))))))(-((((.......))))).....-- ( -31.90)
>DroYak_CAF1 6297 90 + 1
AACAAAUUGGGCAAAUACCGGGCUGCCCGGGGCCACAAAAACAUUCCGA----------------AGAGCGCCACGGGUGGCGCA-CGGGGUCCAAAUUCGCAACCA--
......((((((.....(((((...)))))..............((((.----------------...((((((....)))))).-))))))))))...........-- ( -31.30)
>DroAna_CAF1 6523 107 + 1
AACAAAUUGGGCAAAUACCGGGCUACCAGGCCCAUUAAAAAUAUUCCGUAUUUUUGGCAAUCUUUAAAACGCCACGGGGGUUGGCUGAAGAUCC--AUCCGAACCCAUC
.........(((.......(((((....))))).((((((((((...)))))))))).............)))..(((..((((.((......)--).)))).)))... ( -28.30)
>consensus
AACAAAUUGGGCAAAUACCGGGCUGCCCGGGGCAACAAAAACAUUCAGC________________AAAGCGCCACGGGUGGCGCA_CUGGGUCCAAAUCCGUAACCA__
......((((((.....(((((...)))))......................................((((((....))))))......))))))............. (-19.86 = -21.08 +   1.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:25 2006