Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 7,986,729 – 7,986,820 |
Length | 91 |
Max. P | 0.893583 |
Location | 7,986,729 – 7,986,820 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 67.15 |
Mean single sequence MFE | -17.54 |
Consensus MFE | -6.84 |
Energy contribution | -7.45 |
Covariance contribution | 0.61 |
Combinations/Pair | 1.42 |
Mean z-score | -1.98 |
Structure conservation index | 0.39 |
SVM decision value | 0.98 |
SVM RNA-class probability | 0.893583 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7986729 91 - 20766785 CUACCUC---CUCCUCCACCUCCUCAGACUCCGCAGCCGCUUCUGUAGUGGCG---UCCGCUUCGAUGGCCUCAUCCAGCUGCUUUUCAUCCUCCUC---- .......---......................(((((((((.....)))))).---...(((..((((....)))).))))))..............---- ( -18.10) >DroSec_CAF1 2517 95 - 1 CUCCCUC---CUCCUCCACCUCCUCAGAUUCCGCAGCCGCUUCUGAAGUGGCG---UCCGCUUCGAUGGCCUCAUCCAGCUGCUUCUCANNNNNNNNNNNN .......---......................(((((.......(((((((..---.)))))))((((....))))..))))).................. ( -19.80) >DroEre_CAF1 2200 85 - 1 CUUCCUC---CUCC------UCCUCAGGCUCAGCAGCCGCUUCUGUAGUGGCC---UCCGCCUCGAUGGCCUCAUCCAGCUGCUUCUCAUCCUCCUC---- .......---....------.....(((..((((.((((((.....)))))).---...(((.....)))........))))..)))..........---- ( -19.90) >DroYak_CAF1 2103 85 - 1 CUUCCUC---CUCC------UCCUCAGGCUCAGCAGCCGCUUCAGUAGUGGCC---UCCGCCUCGAUGGCCUCGUCCAGCUGCUUCUCAUCCUCCUC---- .......---....------.....(((..((((.((((((.....)))))).---...(((.....)))........))))..)))..........---- ( -19.90) >DroMoj_CAF1 3751 85 - 1 CUGCCUC---CGCU------GCCUUAGUUUCU---GCAUCAUUCGAUUCAGUCUGAUCUGAUGCAAGUGCUUCAUCUAGCUGCUUCUCAUCCGCUUC---- .......---.(((------(....(((...(---((((((...((((......)))))))))))...))).....)))).................---- ( -15.20) >DroAna_CAF1 2103 79 - 1 ACUCUUCAGUUUCC------UCCUCA---------GCUUCUUUGGGAUCAGCC---UCGGCCUCGAUAGCUUCAUCUAACUGUUUCUCAUCCUCCUC---- ......(((((...------.....(---------(((...(((((..(....---..)..))))).))))......)))))...............---- ( -12.34) >consensus CUUCCUC___CUCC______UCCUCAGACUCAGCAGCCGCUUCUGUAGUGGCC___UCCGCCUCGAUGGCCUCAUCCAGCUGCUUCUCAUCCUCCUC____ ........................(((........((((((.....)))))).......(((.....))).........)))................... ( -6.84 = -7.45 + 0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:24 2006