Locus 2141

Sequence ID 2R_DroMel_CAF1
Location 7,984,656 – 7,984,749
Length 93
Max. P 0.723391
window3548

overview

Window 8

Location 7,984,656 – 7,984,749
Length 93
Sequences 6
Columns 115
Reading direction forward
Mean pairwise identity 78.75
Mean single sequence MFE -27.77
Consensus MFE -17.95
Energy contribution -18.20
Covariance contribution 0.25
Combinations/Pair 1.22
Mean z-score -1.52
Structure conservation index 0.65
SVM decision value 0.41
SVM RNA-class probability 0.723391
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7984656 93 + 20766785
----------------------AAUAUGGGUCGGAAGGCUGAAUACAGUGAGAAACCGAAAAAGGGACCUGGGCGCAAGGCGCGCAAGCAAGGACCGCCUGUUUUUCGCAAACAA
----------------------....(.((((....)))).).....(((((((((.(.....((..(((.(.(....).)((....)).))).))..).)))))))))...... ( -29.80)
>DroSec_CAF1 363 115 + 1
AACCGAAUAAACUAAGUUAAAGAAUAUGGGUCGGAAGGCUGAAUACAGUGAGAAACCGAAAAAGGGACCUGGGCGCAAGGCGCGCAAACAAGGACCGCCUGUUUUUCGCAAACAA
...............(((........(.((((....)))).).....(((((((((.(.....((..(.((.((((.....))))...)).)..))..).))))))))).))).. ( -30.20)
>DroSim_CAF1 1 93 + 1
----------------------AAUAUGGGUAGGAAGGCUGAAUACAGUGAGAAACCGAAAAAGGGACCUGGGCGCAAGGCGCGCAAACAAGGACCGCCUGUUUUUCGCAAACAA
----------------------....(.(((......))).).....(((((((((.(.....((..(.((.((((.....))))...)).)..))..).)))))))))...... ( -23.40)
>DroEre_CAF1 86 114 + 1
AACCGGAUAAAUUAAGUUAAA-AAUAUGGGUCGGAAGGCGGAAUACAGUGAUAAACCGAAGAAGGGACCUGGGCGCAAGGCGCGCAAACAAGGAGCACCUGUUUUUCGUAAACAA
..((((.((.(((........-))).))..))))...((((((.((((((.....((......))..((((.((((.....))))...).)))..)).)))).))))))...... ( -26.20)
>DroYak_CAF1 1 93 + 1
----------------------AAUAUGGGUCGGAAAGCGGAAUAUAGUGACAAACCGAAGAAGGGACCUGGACGCAAGGCCCGCAAACAAGGACCGCCUGUUUUUCGCAAACAA
----------------------....((..(((((((((((......(((.((..((......))....))..)))..((.((........)).))..)))))))))).)..)). ( -21.90)
>DroPer_CAF1 377 114 + 1
AAUUAAAGAAAUUUAGUUAAA-AGUAUGGGUCGCAAGGCUGAGUUCGAUGACAAACCGAAGAAGGGACCUGGCCGCAAGGCGCGCAAACAGGGCGCACCCGUAUUUCGCAAGCAG
(((((((....)))))))...-.((.((((((....))))................(((((..(((.....(((....)))((((.......)))).)))...))))))).)).. ( -35.10)
>consensus
______________________AAUAUGGGUCGGAAGGCUGAAUACAGUGAGAAACCGAAAAAGGGACCUGGGCGCAAGGCGCGCAAACAAGGACCGCCUGUUUUUCGCAAACAA
...........................(((((.....((((....))))......((......))))))).(.(....).)(((.((((.(((....)))))))..)))...... (-17.95 = -18.20 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:23 2006