Locus 2139

Sequence ID 2R_DroMel_CAF1
Location 7,982,982 – 7,983,082
Length 100
Max. P 0.538439
window3543

overview

Window 3

Location 7,982,982 – 7,983,082
Length 100
Sequences 6
Columns 100
Reading direction forward
Mean pairwise identity 82.00
Mean single sequence MFE -27.98
Consensus MFE -18.58
Energy contribution -18.20
Covariance contribution -0.38
Combinations/Pair 1.44
Mean z-score -1.53
Structure conservation index 0.66
SVM decision value 0.01
SVM RNA-class probability 0.538439
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7982982 100 + 20766785
CGCGAAAUAUUUGGCCGCCAGACCCAGCAUAUCGGCCUUGGUCUUUAGUAACUUGACCUCAUAGUUAUUCAGCGGUGGCUUAUCAUUUGUGCAUUCGCCU
.(((((((....((((((((((((..((......))...)))))..(((((((((....)).)))))))....)))))))....)))).)))........ ( -28.60)
>DroSec_CAF1 19202 100 + 1
CCCGAAAUAUUUGGCCGCCAGACCAAGCAUAUCGGCCUUGGUCUUUAGUAACUUGACCUCAUAGUUAUUCAGCGGUGGCUUUUCAUUUGUGCAUUCUCCU
...((((.....((((((((((((((((......).))))))))..(((((((((....)).)))))))....)))))))))))................ ( -29.20)
>DroSim_CAF1 19864 100 + 1
CCCGAAAUAUUUCGCCGCCAGACCCAGCAUAUCGGCCUUGGUCUUUAGUAACUUGACCUCAUAGUUAUUCAGCGGUGGCUUUUCGUUAGUGCAUUCGCCU
..(((((....(((((((.(((((..((......))...)))))..(((((((((....)).)))))))..)))))))..)))))..((.((....)))) ( -26.30)
>DroEre_CAF1 19406 100 + 1
CCCGAAAUAUUUGGCCACCAGACCAAUCAUAUCGGCCUUGGUCUUUAGUAACUUGACCUCGUAGUUAUUAAGCGGUGGCUUUGCAUUUGUGCAUUUGCCU
..((((......((((((((((((((...........)))))))(((((((((((....)).)))))))))..))))))).((((....))))))))... ( -30.00)
>DroYak_CAF1 19540 100 + 1
CCCGAAAUAUUUGGCCGCCAGACCCAGCAUAUCCGCCUUGGUUUUUAGUAACUUGACCUCGAAGUUACUUAGCGGAGGCUUUGCAUUUGUGCACUUGCUU
.........(((((...)))))...((((.....(((((.(((...((((((((.......)))))))).))).)))))..((((....))))..)))). ( -27.40)
>DroAna_CAF1 19608 100 + 1
ACUAAUGGACUUGGCUGCCAGCCCCAGAAGAUCUGCCUUGGUUUUUAGAAGUUUCACUUCGAAGUUGUUGAGCGGCGGUUUGGACGACGUGGAGUUUCCA
......(((((..(((((((((....(((((((......))))))).((((.....))))......)))).))))))))))(((.(((.....)))))). ( -26.40)
>consensus
CCCGAAAUAUUUGGCCGCCAGACCCAGCAUAUCGGCCUUGGUCUUUAGUAACUUGACCUCAUAGUUAUUCAGCGGUGGCUUUGCAUUUGUGCAUUCGCCU
....((((....((((((((((((..((......))...)))))..(((((((((....)).)))))))....)))))))....))))............ (-18.58 = -18.20 +  -0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:19 2006