Locus 2138

Sequence ID 2R_DroMel_CAF1
Location 7,976,563 – 7,976,668
Length 105
Max. P 0.623747
window3542

overview

Window 2

Location 7,976,563 – 7,976,668
Length 105
Sequences 6
Columns 115
Reading direction reverse
Mean pairwise identity 78.13
Mean single sequence MFE -23.64
Consensus MFE -10.36
Energy contribution -10.78
Covariance contribution 0.42
Combinations/Pair 1.24
Mean z-score -2.22
Structure conservation index 0.44
SVM decision value 0.18
SVM RNA-class probability 0.623747
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7976563 105 - 20766785
AUCAUGCGAAAUGAAAACAACGUUGCUAACGCAACACCCCUUGUUUCUGGAACCCCGACUGCCG-------ACUCCGGA-UCCCUCUGCUCCCUGGACAAACAACCAG--AGAUA
.((((.....)))).......(((((....)))))......(((((((((.....((.....))-------..(((((.-............))))).......))))--))))) ( -25.02)
>DroPse_CAF1 26579 84 - 1
AUCAAACAAAAUGAAAACAACGUUGGU-----AACACCCCUGC----------CACCA--------------UCCCAGGCCUAGUCUCUCCCCUAGGCAAACAGCCAG--AGAUA
(((..................(.((((-----(.......)))----------)).).--------------......((((((........))))))..........--.))). ( -14.70)
>DroSec_CAF1 12867 98 - 1
AUCAUGCGAAAUGAAAACAACGUUGCUAACGCAACACCCCUUGUUUCUGGAACCCCGA--------------CUCCGGA-UCCCUCUGCUCCCUGGACAAACAACCAG--AGAUA
.((((.....)))).......(((((....)))))......(((((((((....(((.--------------...))).-......((.((....)))).....))))--))))) ( -24.90)
>DroSim_CAF1 13466 112 - 1
AUCAUGCGAAAUGAAAACAACGUUGCUAACGCAACACCCCUUGUUUCUGGAACCCCGACUCCCGACUCUCGACUCCGGA-UCCCUCUGCUCCCUGGACAAACAACCAG--AGAUA
.((((.....)))).......(((((....)))))......(((((((((............((.....))..(((((.-............))))).......))))--))))) ( -25.62)
>DroEre_CAF1 12977 99 - 1
AUCAUGCGAAAUGAAAACAACGUUGCUAACGCAACACCCCUUGUUUCUGGAACCCCGA-------------AGCCUGGA-UCCCUCUGCUCCCUGGCCAAACAACCAG--AGAUA
.((((.....)))).......(((((....)))))......(((((((((........-------------.(((.(((-.(.....).)))..))).......))))--))))) ( -25.49)
>DroYak_CAF1 13083 100 - 1
AUCAUGCGAAAUGAAAACAACGUUGCUAACGCAACACCCCUUGUUUCUGUAG-CCUGU-------------AGCCUGGA-UCCCUCCGCUCCCUGGCCAAACAAGCAGAGAGAUA
.((((.....)))).......(((((....)))))......(((((((.(.(-(.(((-------------.(((.(((-.(.....).)))..)))...))).))).))))))) ( -26.10)
>consensus
AUCAUGCGAAAUGAAAACAACGUUGCUAACGCAACACCCCUUGUUUCUGGAACCCCGA_____________ACCCCGGA_UCCCUCUGCUCCCUGGACAAACAACCAG__AGAUA
.((((.....)))).......(((((....)))))........................................((((.....))))....((((........))))....... (-10.36 = -10.78 +   0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:18 2006