Locus 2136

Sequence ID 2R_DroMel_CAF1
Location 7,973,592 – 7,973,685
Length 93
Max. P 0.664548
window3539

overview

Window 9

Location 7,973,592 – 7,973,685
Length 93
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 87.32
Mean single sequence MFE -31.48
Consensus MFE -25.99
Energy contribution -25.63
Covariance contribution -0.36
Combinations/Pair 1.23
Mean z-score -1.92
Structure conservation index 0.83
SVM decision value 0.28
SVM RNA-class probability 0.664548
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7973592 93 - 20766785
UUUGCGGCUGACUGAAAGCCGCCAGUUGGCCCCA-----UGAAAUGGCCAUGUUGACCAAGUGGUCGUUGCCCCAGCAACCAACAUUCACAAACAGGU
...((((((.......))))))..(((((((...-----......))))(((((((((....))))(((((....))))).))))).....))).... ( -30.90)
>DroGri_CAF1 16214 97 - 1
CUAGUUGCUAGUUGGCAGUUGCCAGUUGGCAGUUGGCAGUUUGCUGGCCGC-UUUGUGAUGUGGUCGUUGCCCCAGCAACCAACAUUCAUAAACAAGU
(((..(((((..((((....))))..)))))..)))..(((((..((((((-........))))))(((((....))))).........))))).... ( -34.30)
>DroSec_CAF1 9908 93 - 1
UUUGCGGCUGACUGAAAGCCGCCAGUUGGCCCCA-----UGAAAUGGCCAUGUUGACCAAGUGGUCGUUGCCCCAGCAACCAACAUUCACAAACAGGU
...((((((.......))))))..(((((((...-----......))))(((((((((....))))(((((....))))).))))).....))).... ( -30.90)
>DroSim_CAF1 9935 93 - 1
UUUGCGGCUGACUGAAAGCCGCCAGUUGGCCCCA-----UGAAAUGGCCAUGUUGACCAAGUGGUCGUUGCCCCAGCAACCAACAUUCACAAACAGGU
...((((((.......))))))..(((((((...-----......))))(((((((((....))))(((((....))))).))))).....))).... ( -30.90)
>DroEre_CAF1 9992 93 - 1
UUUGCGGCUGACUGAAAGCCGCCAGUUGGCCCCA-----UGAAAUGGCCAUGUUGACCAAGUGGUCGUUGCCCCAGCAACCAACAUUCACGAACAGGU
...((((((.......))))))..(((((((...-----......))))(((((((((....))))(((((....))))).))))).....))).... ( -31.00)
>DroYak_CAF1 10003 93 - 1
UUUGCGGCUGACUGAAAGCCGCCAGUUGGCCCCA-----UGAAAUGGCCAUGUUGACCAAGUGGUCGUUGCCCCAGCAACCAACAUUUACAAACAGGU
...((((((.......))))))..(((((((...-----......))))(((((((((....))))(((((....))))).))))).....))).... ( -30.90)
>consensus
UUUGCGGCUGACUGAAAGCCGCCAGUUGGCCCCA_____UGAAAUGGCCAUGUUGACCAAGUGGUCGUUGCCCCAGCAACCAACAUUCACAAACAGGU
...((((((.......))))))..(((((.............(((((((((.........)))))))))((....))..))))).............. (-25.99 = -25.63 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:15 2006