Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 7,967,578 – 7,967,681 |
Length | 103 |
Max. P | 0.509007 |
Location | 7,967,578 – 7,967,681 |
---|---|
Length | 103 |
Sequences | 6 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 76.04 |
Mean single sequence MFE | -23.88 |
Consensus MFE | -12.15 |
Energy contribution | -12.15 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.19 |
Mean z-score | -1.69 |
Structure conservation index | 0.51 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.509007 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7967578 103 - 20766785 ACAACGGCAAA--GAACAACAUCUAGAUCAAC--AG--UGAGCAGGAUUUC--AUGGCGAAAUCCUUUACCUUUUCAUUCCACUCUUGGUUAUACGAUUGAGAUUCGUCGA ....((((...--...................--.(--(((..((((((((--.....)))))))))))).............(((..(((....)))..)))...)))). ( -21.10) >DroPse_CAF1 17574 102 - 1 ACGGCGACAA---GAACAACGUCAAUAAUCAG--UU--UGAGGAGGAUUUC--GAAGCGAAAUCCUUUACCUUUUCGGUCCACUCUUGGUUAUAUGAUUGAGAUUCGUCGA .((((((...---...((..((((((((((((--..--.((((((((((((--(...)))))))))).(((.....)))...))))))))))).))))))....)))))). ( -29.00) >DroGri_CAF1 5371 107 - 1 ACAACAACAACGAUAAUAACAUCAAUAAGUAG--UUAAGUAGAAGGAUUUC--AUUGUGAAAUCCUUUACCUUUUCAUUCCAUUCGGGAUUAUAUGAUUGAGAUUCAUCGA ..........(((((((....(((((..((((--..(((..((((((((((--.....))))))))))..)))..)(((((....))))))))...))))).))).)))). ( -24.60) >DroWil_CAF1 22639 103 - 1 ACAAAAGAAA----AAAUACAUCAAU--UCACUUUG--UGAGAAGGAUUUCUCAUAGCGAAAUCCUUUACCUUUUCAUUCCAUUCUGGAUUAUACGAUUGAGAUUCAUCGA ......((((----(...........--((((...)--)))((((((((((.......))))))))))...)))))..(((.....))).....((((.(.....))))). ( -20.10) >DroAna_CAF1 4957 93 - 1 ----------A--ACACAACAUCUAGAUCAAC--AU--UGAGAAGGAUUUC--GAGGCGAAACCCUUUACCUUUUCGUUCCACUCUUGGUUAUACGAUUGGGAUUCGUCGA ----------.--............(((....--..--...(((((.((((--(...))))).))))).(((..((((.(((....)))....))))..)))....))).. ( -19.50) >DroPer_CAF1 17357 102 - 1 ACGGCGACAA---GAACAACGUCAAUAAUCAG--UU--UGAGGAGGAUUUC--GAAGCGAAAUCCUUUACCUUUUCGGUCCACUCUUGGUUAUAUGAUUGAGAUUCGUCGA .((((((...---...((..((((((((((((--..--.((((((((((((--(...)))))))))).(((.....)))...))))))))))).))))))....)))))). ( -29.00) >consensus ACAACGACAA___GAACAACAUCAAUAAUCAC__UU__UGAGAAGGAUUUC__AAAGCGAAAUCCUUUACCUUUUCAUUCCACUCUUGGUUAUACGAUUGAGAUUCGUCGA .........................................((((((((((.......))))))))))...............(((..(((....)))..)))........ (-12.15 = -12.15 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:13 2006