| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 7,966,778 – 7,966,874 |
| Length | 96 |
| Max. P | 0.548430 |
| Location | 7,966,778 – 7,966,874 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 81.13 |
| Mean single sequence MFE | -21.12 |
| Consensus MFE | -17.71 |
| Energy contribution | -17.27 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.17 |
| Structure conservation index | 0.84 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.548430 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7966778 96 + 20766785 AAAACAAAC-AAAAAACAAAAUCGCCCAA-AAAAUCCGAUUAAGAAUUCCGACACAUCGAGGGUGGCGAGUCCGAGGACUCGAGUCAGUGCGAGUGCA ...((..((-...........((((((..-.......((........))(((....))).))))))((((((....)))))).))..))((....)). ( -20.60) >DroPse_CAF1 16772 92 + 1 A--UUAAACUGAAAAUGAAAAUA---UAA-AUAAAACCUUCAAGAAUAUCGACACAUCGAGGGCGCCGAGUCCUCGGGCUCGAGUCAGUGCGAGUGCA .--....(((((...((((....---...-........))))......((((....((((((((.....))))))))..)))).)))))((....)). ( -22.16) >DroSec_CAF1 3116 97 + 1 GAAACAAAC-AAAAACCAAAAUCGCCCAACAAAAUCCGAUUAAGAAUUCCGACACAUCGAGGGUGGCGAGUCCGAGGACUCGAGUCAGUGCGAGUGCA ...((..((-...........((((((..........((........))(((....))).))))))((((((....)))))).))..))((....)). ( -20.60) >DroEre_CAF1 3103 87 + 1 --AACAAA--------CAAAAUCGCCCAA-AAAAUCCGAUUAAGAAUUCCGACACAUCGAGGGUGGCGAGUCCGAGGACUCGAGUCAGUGCGAGUGCA --.((..(--------(....((((((..-.......((........))(((....))).))))))((((((....)))))).))..))((....)). ( -20.60) >DroYak_CAF1 3138 87 + 1 --AACAAA--------CAAAAUCGCCCAA-AAAAUCCGAUUAAGAAUUCCGACACAUCGAGGGUGGCGAGUCCGCGGACUCGAGUCAGUGCGAGUGCA --.((..(--------(....((((((..-.......((........))(((....))).))))))((((((....)))))).))..))((....)). ( -20.60) >DroPer_CAF1 16550 92 + 1 A--UUAAACUGAAAAUGAAAAUA---CAA-AUAAAACCUUCAAGAAUAUCGACACAUCGAGGGCGCCGAGUCCUCGGGCUCGAGUCAGUGCGAGUGCA .--....(((((...((((....---...-........))))......((((....((((((((.....))))))))..)))).)))))((....)). ( -22.16) >consensus A_AACAAAC__AAAA_CAAAAUCGCCCAA_AAAAUCCGAUUAAGAAUUCCGACACAUCGAGGGUGGCGAGUCCGAGGACUCGAGUCAGUGCGAGUGCA ..................................................(.(((.(((..(((..((((((....)))))).)))....))))))). (-17.71 = -17.27 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:12 2006