Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 7,963,061 – 7,963,158 |
Length | 97 |
Max. P | 0.545580 |
Location | 7,963,061 – 7,963,158 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 83.41 |
Mean single sequence MFE | -40.45 |
Consensus MFE | -27.97 |
Energy contribution | -28.62 |
Covariance contribution | 0.65 |
Combinations/Pair | 1.33 |
Mean z-score | -1.80 |
Structure conservation index | 0.69 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.545580 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7963061 97 - 20766785 UCGCCAGUGUGAUGCCAUUGUCUGGUGUCUGCUGGAGUGGGU-GCAU-CCCUGCUAGCGGCAAUCGCCGGAAGAGGAAGUGAGCAAUUCAGGGUGGCAG ..((((.(.((((((((((.(((((((..(((((.((..((.-....-.))..))..)))))..)))))))......)))).)))..))).).)))).. ( -42.40) >DroSec_CAF1 15002 97 - 1 UCGCCAGUGUGAUGCCAUUUUCUGGUGGCUGCUGGAGUGGGU-GCAU-CCCUGCUGGCGGCAAUCGCCGGAAGAGGAAGUGAGCAAUUCAGGGUGUCAG .........(((((((.(((((((((((((((..(...(((.-....-)))..)..)))))...)))))))))).(((........)))..))))))). ( -39.30) >DroSim_CAF1 14728 97 - 1 UCGCCAGUGUGACUCCAUUGUCUGGUGGCUGCUGGAGUGGGU-GCGU-CCCUGCUGGCGGCAAUCGCCGGAAGAGGAAGUGAGCAAUUCAGGGUGUCAG .((((..(((.(((((.((.((((((((((((..(...(((.-....-)))..)..)))))...))))))).)))).)))..)))......)))).... ( -37.90) >DroEre_CAF1 15085 97 - 1 UCGCCAGUGUGAUGCCAUUGUCUGGUGGCUGCUGGUGUGGGU-GCCU-CCCUACUGGCGGCCGUUGCCGGAAGAGGAAGUGAGCAAUCCAGGAUGGUAG ..((((.((.(((((((((.((((((((((((..(((.(((.-....-))))))..))))))...))))))......)))).)).)))))...)))).. ( -41.70) >DroYak_CAF1 15041 93 - 1 UCGCCAGUGUGGUGCCAUUGUCUGGUGGCUGCUGGAGUGGGU-GCC--CCGUGCUGGCG---GUUGCCGGAAGAGGAAGUGAGCAAUCGAGGGUGGCAG ..((((.(.((((((((((.(((((..(((((..(..((((.-..)--)))..)..)))---))..)))))......)))).)).))))..).)))).. ( -43.50) >DroAna_CAF1 13806 99 - 1 CUCUCUGUGUGGCAGCAUAGUCUGGUGACUCUGGGUGUGGGCAGCCUCCCCUGCCGACGGCAAUCGCCGGAAGAGGAAGUGAGCAAUCCGCAGAGACAG .((((((((..((.((.(..((((((((.....(.(((.(((((......))))).))).)..))))))))..)....))..))....))))))))... ( -37.90) >consensus UCGCCAGUGUGAUGCCAUUGUCUGGUGGCUGCUGGAGUGGGU_GCCU_CCCUGCUGGCGGCAAUCGCCGGAAGAGGAAGUGAGCAAUCCAGGGUGGCAG ..((((.(.((((((((((.(((((((((((((((...(((.......)))..)))))))...))))))))......)))).)))..))).).)))).. (-27.97 = -28.62 + 0.65)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:08 2006