Locus 2129

Sequence ID	2R_DroMel_CAF1
Location	7,961,343 – 7,961,434
Length	91
Max. P	0.983046

overview

Window 1

Location	7,961,343 – 7,961,434
Length	91
Sequences	5
Columns	92
Reading direction	reverse
Mean pairwise identity	88.31
Mean single sequence MFE	-26.99
Consensus MFE	-20.49
Energy contribution	-20.93
Covariance contribution	0.44
Combinations/Pair	1.12
Mean z-score	-2.83
Structure conservation index	0.76
SVM decision value	1.93
SVM RNA-class probability	0.983046
Prediction	RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7961343 91 - 20766785
CCAUUGCAAGUGUCCCCAGCGCCCCAAAAACACCUCCUCGCUCUUUGGGGAUUGUGCCCAAUUGCA-ACCACAAUUGCUGGCAUCUUUUGCU
.....(((((.(...(((((.(((((((...............)))))))((((((..........-..)))))).)))))...).))))). ( -24.86)
>DroSec_CAF1 13295 89 - 1
CCAUUGCAAGUGUCCCCAGCGCCCCAA-AACGCCUCCUCGUUCUUUGGGGAUU-UGCCCAAUUGCA-ACCGCAAUUGCUGGCAGCUUUUGCU
.....(((((.((..(((((.((((((-((((......)))..)))))))...-.....((((((.-...)))))))))))..)).))))). ( -32.00)
>DroSim_CAF1 12991 89 - 1
CCAUUGCAAGUGUCCCCAGCGCCCCAA-AACGCCUCCUAGUUCUUUGGGGAUU-UGCCCAAUUGCA-ACCGCAAUUGCUGGCAGCUUUUGCU
.....(((((.((..(((((.((((((-(..((......))..)))))))...-.....((((((.-...)))))))))))..)).))))). ( -31.60)
>DroEre_CAF1 13308 86 - 1
CCAUUGCUAGUGUCCC-AGUACC---A-AACACCUCCUCGUUGUUUGGGGAUU-UGCCCAAUUGCAAACCGCAAUUGCUGGCAGCUUUUGUU
...((((((((.....-....((---(-((((.(.....).)))))))((.((-(((......)))))))......))))))))........ ( -24.00)
>DroYak_CAF1 13381 85 - 1
CCAUUGCAAGUGUCCC-UGUCCC---A-AACACCAACUCGUUCUUUGGGGAUU-UGUCCAAUUGCA-ACCGCAAUUGCUGGCAGCUCUUGUU
.....(((((.((...-..((((---(-((.((......))..)))))))...-(((((((((((.-...)))))))..)))))).))))). ( -22.50)
>consensus
CCAUUGCAAGUGUCCCCAGCGCCCCAA_AACACCUCCUCGUUCUUUGGGGAUU_UGCCCAAUUGCA_ACCGCAAUUGCUGGCAGCUUUUGCU
.....(((((.((((((((.........................))))))))..(((((((((((.....)))))))..))))...))))). (-20.49 = -20.93 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:07 2006