Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 7,953,741 – 7,953,837 |
Length | 96 |
Max. P | 0.999723 |
Location | 7,953,741 – 7,953,837 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 96.86 |
Mean single sequence MFE | -20.32 |
Consensus MFE | -18.78 |
Energy contribution | -19.18 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -2.65 |
Structure conservation index | 0.92 |
SVM decision value | 3.95 |
SVM RNA-class probability | 0.999723 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7953741 96 + 20766785 ACUCCGCGCAGCCCAACAAAAAGUGACGUAUUAAAAAAGGUUGCUAAUUACAAAAGGUAAACAACAAAUAAUGUGCGGAUUAUAUUACCAAAUUCC ..((((((((...........((..((.(........).))..))..((((.....))))...........))))))))................. ( -19.10) >DroSec_CAF1 5472 95 + 1 ACUCCGCGCAGCCCAACAAAAAGUGACGUAUUAAA-AAGGUUGCUAAUUACAAAAGGUAAACAACAAAUACUGUGCGGAUUCUAUUACCAAAUUCC ..(((((((((..........((..((.(......-.).))..))..((((.....))))..........)))))))))................. ( -21.20) >DroSim_CAF1 5475 95 + 1 ACUCCGCGCAGCCCAACAAAAAGUGACGUAUUAAA-AAGGUUGCUAAUUACAAAAGGUAAACAACAAAUACUGUGCGGAUUCUAUUACCGAAUUCC ..(((((((((..........((..((.(......-.).))..))..((((.....))))..........)))))))))................. ( -21.20) >DroEre_CAF1 5579 95 + 1 ACUCCGCGCAGCCCAACAAAAAGUGACGCAUUAAA-AAGGUUGCUAAUUACAAAAGGUAAACAACAAAUACUGUGCGGAUUCUAUUACCAAAUUCC ..(((((((((..........((..((.(......-..)))..))..((((.....))))..........)))))))))................. ( -21.00) >DroYak_CAF1 5607 95 + 1 ACUCCGCGCAGCCCAACAAAAAGUGACGCAUUAAA-GAGGUUGCUAAUUACAAAAGGUAAACAACAAAUACUGUGCGGUUUCUAUUACCAAAUUCC ...((((((((..........((..((.(......-..)))..))..((((.....))))..........)))))))).................. ( -19.10) >consensus ACUCCGCGCAGCCCAACAAAAAGUGACGUAUUAAA_AAGGUUGCUAAUUACAAAAGGUAAACAACAAAUACUGUGCGGAUUCUAUUACCAAAUUCC ..(((((((((..........((..((............))..))..((((.....))))..........)))))))))................. (-18.78 = -19.18 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:01 2006