Locus 2122

Sequence ID 2R_DroMel_CAF1
Location 7,947,622 – 7,947,724
Length 102
Max. P 0.608104
window3517

overview

Window 7

Location 7,947,622 – 7,947,724
Length 102
Sequences 5
Columns 114
Reading direction reverse
Mean pairwise identity 84.38
Mean single sequence MFE -24.40
Consensus MFE -17.00
Energy contribution -16.80
Covariance contribution -0.20
Combinations/Pair 1.14
Mean z-score -1.74
Structure conservation index 0.70
SVM decision value 0.15
SVM RNA-class probability 0.608104
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7947622 102 - 20766785
UUUUAACGCACAGCUCGAAAUUAAAUCAUAUCUCGAGUUGCAAUCGAACUAGCAAGAAGCUACAAAACAAGAUAAUCGCGGCAUUGACUUGUAUAGAUC------------GAG
.......(((..((((((.((........)).)))))))))..((((.(((((.....))......(((((.((((......)))).))))).))).))------------)). ( -21.30)
>DroSec_CAF1 4713 111 - 1
UUUUAACGCACAGCUCGAAAUUAAAUCAAAUCUCGAGUUGCAAUCGAACUAGCA-GAAGCUACAAAACAAGAUAAUCGCGGCAUUGACUUGUAUAAACA--UAAACAUAAACAG
......(((.((((((((.(((......))).)))))))).........((((.-...))))...............)))(((......))).......--............. ( -19.50)
>DroSim_CAF1 4703 111 - 1
UUUUAACGCACAGCUCGAAAUUAAAUCAAAUCUCGAGUUGCAAUCGAACUAGCA-GAAGCUACAAAACAAGAUAAUCGCGGCAUUGACUUGUAUAAACA--UAAACAUAAACAG
......(((.((((((((.(((......))).)))))))).........((((.-...))))...............)))(((......))).......--............. ( -19.50)
>DroEre_CAF1 5860 114 - 1
UUUUAACUCACAGCUCGGAGUAAAAUCAUAUCUCGAGUUGCGAUCGCUCUAGCAAGAAGCUAAAGAAUAAGAUCGUCGCGGCAUUGACUUGUAUAAAGAGUUGGCGAAAGCGAG
...((((((.(((((((..(((......)))..))))))).((((.((.((((.....)))).)).....))))((((......)))).........))))))((....))... ( -33.90)
>DroYak_CAF1 5942 114 - 1
UUUUAACACACAGCUCGGAGUAAAAUCAUAUCUCGAGUUGCAAUCGCACUAGCAAGAAGCUACAAAAUAAGAUCGUCGCGGCAUUGACUUGUAUAAACAGUUGGCGAUAGCGAG
..........(((((((..(((......)))..)))))))...((((..((((.....))))............(((((.(.((((...........))))).))))).)))). ( -27.80)
>consensus
UUUUAACGCACAGCUCGAAAUUAAAUCAUAUCUCGAGUUGCAAUCGAACUAGCAAGAAGCUACAAAACAAGAUAAUCGCGGCAUUGACUUGUAUAAACA__UAAACAUAAAGAG
......(((.((((((((.(((......))).)))))))).........((((.....))))...............)))(((......)))...................... (-17.00 = -16.80 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:54 2006