| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 7,946,109 – 7,946,209 |
| Length | 100 |
| Max. P | 0.648548 |
| Location | 7,946,109 – 7,946,209 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 87.00 |
| Mean single sequence MFE | -49.47 |
| Consensus MFE | -35.21 |
| Energy contribution | -36.77 |
| Covariance contribution | 1.56 |
| Combinations/Pair | 1.16 |
| Mean z-score | -3.32 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.648548 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7946109 100 + 20766785 UGCCCGCAGUUGUGGUUGUCGCCGCACCAAAUGCCGGAGUACUGCCAAAGGCGGAGCCGCCAAAGGCAGAAGUUCCUGUGGCGGCUCCAAAAGCCGGGGC .(((((((((((((((....))))))((.......))...)))))....(((((((((((((.(((........))).))))))))))....))).)))) ( -49.50) >DroSec_CAF1 3238 99 + 1 UGCCCGCUGUUGUGG-UGUCGCCGCACCAAAUGCCGGAGCACUGCCAAAGGCGGAGCCGCCAAAGGCAGAAGUUCCUGUGGCGGCUCCAAAAGCAGGGGC .((((.(((((.(((-.(((((((((.........(((((.(((((...((((....))))...)))))..)))))))))))))).)))..))))))))) ( -54.90) >DroSim_CAF1 3228 100 + 1 UGCCCGCUGUUGUGGUUGUCGCCGCACCAAAUGCCGGAGCACUGCCAAAGGCGGAGCCGCCAAAGGCAGAAGUUCCUGUGGCGGCUCCAAAAGCAGGGGC .((((.(((((.(((..(((((((((.........(((((.(((((...((((....))))...)))))..)))))))))))))).)))..))))))))) ( -53.40) >DroEre_CAF1 4460 100 + 1 UGCCCGCUGUUGUGGUUGUCGCCGCUCCAAAUGCCGGAGCGCUGCCAAAGGCGGUGCCGCCGAAGGCAGAAGUUGCUGUGGCAGCACCAAAAGCCGGGGC .(((((((.(((..((((((((((((((.......))))))(((((...((((....))))...)))))........))))))))..))).)))..)))) ( -50.70) >DroYak_CAF1 4482 100 + 1 UGCCCGCUGUUGUGGUCGUCGCCGCUCCAAAGGCCGGAGCACUGCCAAAGGCGGAGCCGCCAAAGGCAGAAGUUGCUGUGGCGGCACCAAAAGCCGGGGC .(((((((....((((.(((((((((((.......))))).(((((...((((....))))...)))))..........))))))))))..)))..)))) ( -52.30) >DroAna_CAF1 3247 100 + 1 UUGAAGCAGUUGUGGUUGCUGGAGCUCCAAAAGCUGGAGCACUUCCAAAAGCGGAUCCUCCAAAAGCCGGAGUAGCUGCUGCAGCACCAAACGCCGGGGU .....((..(((..(((((((((((((((.....))))))...))))..(((((...((((.......))))...))))))))))..)))..))...... ( -36.00) >consensus UGCCCGCUGUUGUGGUUGUCGCCGCACCAAAUGCCGGAGCACUGCCAAAGGCGGAGCCGCCAAAGGCAGAAGUUCCUGUGGCGGCACCAAAAGCCGGGGC .(((((((.(((..((((((((.((.((.......)).)).(((((...((((....))))...)))))........))))))))..))).)))..)))) (-35.21 = -36.77 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:53 2006