Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,509,851 – 1,509,952 |
Length | 101 |
Max. P | 0.980980 |
Location | 1,509,851 – 1,509,952 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 91.29 |
Mean single sequence MFE | -27.02 |
Consensus MFE | -21.82 |
Energy contribution | -22.26 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.12 |
Mean z-score | -2.29 |
Structure conservation index | 0.81 |
SVM decision value | 1.88 |
SVM RNA-class probability | 0.980980 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1509851 101 - 20766785 UUUUGAUUGGCAAUCUGUUCCUAACUAGACUGCUAAUAAGUUGGGUAGCAAAUAUCAGACAACUGGUAUUGGUUCUGGGGAAAAUCAAUCAACAACAAUGG ..((((((((...(((((((((((((............))))))).))).((((((((....))))))))........)))...))))))))......... ( -23.50) >DroSec_CAF1 40879 101 - 1 UUUUGAUUGGCAAUCUGUCCCUAACUAGACUGCUAAUAAGUUGGGUAGCCAGUAUCAGACAACUGGUACUGGUUCUGGGGAAAAUCAAUCAACAACAAAGG ..((((((((.......(((((((((.((((.......)))).)))((((((((((((....)))))))))))).))))))...))))))))......... ( -35.00) >DroSim_CAF1 45178 101 - 1 UUUUGAUUGGCAAUCUGUCCCUAACUAGACUGCUAAUAAGUUGGGUAGCCAGUAUCAGACAACUGGUACUGGUUCUGGGGAAAAUCAAUCAACAACAAAGG ..((((((((.......(((((((((.((((.......)))).)))((((((((((((....)))))))))))).))))))...))))))))......... ( -35.00) >DroEre_CAF1 49520 101 - 1 UUUUUAUUGGCAAUAUGGCCCUAACUGGAUUGCUAAUAAGUUCUGUAGCCAAUAUCAGACAACUGGUAUUCGUUCUGGGGAAAAUCAGUCAACAAAAAAAG (((((.(((((.......(((((((.(((((.......))))).))(((.((((((((....)))))))).))).))))).......))))).)))))... ( -23.24) >DroYak_CAF1 64802 101 - 1 UUUUGAUUAGCAAUCUGUCCCUAACUAGACUGCUCAUAAGUUGUAUAGCCCAUAUCAGACAACUGGUAUUCGUUCUGGGGAAAAUCAAUCAACAACAAAGG (((((((.((((.((((........)))).)))).))..((((.....((((((((((....)))))))........))).........))))..))))). ( -18.34) >consensus UUUUGAUUGGCAAUCUGUCCCUAACUAGACUGCUAAUAAGUUGGGUAGCCAAUAUCAGACAACUGGUAUUGGUUCUGGGGAAAAUCAAUCAACAACAAAGG ..((((((((.......(((((((((.((((.......)))).)))(((.((((((((....)))))))).))).))))))...))))))))......... (-21.82 = -22.26 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:35 2006