Locus 2118

Sequence ID 2R_DroMel_CAF1
Location 7,931,598 – 7,931,689
Length 91
Max. P 0.642079
window3509

overview

Window 9

Location 7,931,598 – 7,931,689
Length 91
Sequences 6
Columns 106
Reading direction forward
Mean pairwise identity 83.14
Mean single sequence MFE -17.22
Consensus MFE -13.01
Energy contribution -13.07
Covariance contribution 0.06
Combinations/Pair 1.28
Mean z-score -1.72
Structure conservation index 0.76
SVM decision value 0.22
SVM RNA-class probability 0.642079
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7931598 91 + 20766785
AGGUUGAAAGAACAAACA-------------A-CCGAAU-AACCUUUUGGGCCACAAAACGGCAAACGAUUUGGCCACCUAACAUAUUUGCAUAUAACGUAAACAC
.(((..((..........-------------.-(((((.-.....)))))(((.......)))......))..)))..........(((((.......)))))... ( -17.10)
>DroPse_CAF1 4755 100 + 1
AGGCUGAAAGAACAAACACCAAACGGGCAAAAACCAGCUAAAUCUUUUGUGCCACGAAACGGCAAGCGAUUUGGCCAC-----AUAUUUGCAUAA-GUGUAAGCAU
..(((......((.....((....))(((((.....((((((((.....((((.......))))...))))))))...-----...)))))....-))...))).. ( -23.10)
>DroSec_CAF1 5735 91 + 1
AGGUUGAAAGAACCAACA-------------A-CCGAAU-AACCUUUUGGGCCACAAAACGGCAAACGAUUUGGCCACCUAACAUAUUUGCAUAAAACGUAAACAC
.(((..((..........-------------.-(((((.-.....)))))(((.......)))......))..)))..........(((((.......)))))... ( -17.10)
>DroSim_CAF1 5720 91 + 1
AGGUUGAAAGAACAAACA-------------A-CCGAAU-AACCUUUUGGGCCACAAAACGGCAAACGAUUUGGCCACCUAACAUAUUAGCAUAAAACGUAAACAC
.(((..((..........-------------.-(((((.-.....)))))(((.......)))......))..))).............................. ( -15.90)
>DroEre_CAF1 5624 86 + 1
AGGUUGAAAGAACAGACA-------------A-CCAAAU-AACCUUUUGGGCCACAAAACGGCAAACGAUUUGGCCACCU-----AUUUGCAUAAAACGUAAACAC
.(((..((..........-------------.-(((((.-.....)))))(((.......)))......))..)))....-----.(((((.......)))))... ( -17.40)
>DroYak_CAF1 5718 86 + 1
AAGUUGAAAGAACAAAUA-------------A-GCGAAU-AACCUUUUGGGCCACAAAACGGCAAACGAUUUGACCACCU-----AUUUGCAUAAAACGUAAAUAC
..(((.....))).....-------------.-((((((-(.((....))(((.......)))................)-----))))))............... ( -12.70)
>consensus
AGGUUGAAAGAACAAACA_____________A_CCGAAU_AACCUUUUGGGCCACAAAACGGCAAACGAUUUGGCCACCU___AUAUUUGCAUAAAACGUAAACAC
.(((..((.........................(((((.......)))))(((.......)))......))..)))..........(((((.......)))))... (-13.01 = -13.07 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:46 2006