Locus 2116

Sequence ID 2R_DroMel_CAF1
Location 7,926,938 – 7,927,030
Length 92
Max. P 0.500000
window3506

overview

Window 6

Location 7,926,938 – 7,927,030
Length 92
Sequences 6
Columns 94
Reading direction reverse
Mean pairwise identity 79.30
Mean single sequence MFE -16.20
Consensus MFE -11.84
Energy contribution -12.15
Covariance contribution 0.31
Combinations/Pair 1.22
Mean z-score -0.98
Structure conservation index 0.73
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7926938 92 - 20766785
AAUAGUUAAUCAGAAGUCUUUAUCUAAA-UAUUAUAACCAUAUAAAA-AAACCUUGGCUGAUUCACUUUGGCUUGCCAAGAAAAUGAGCAGAAU
......................(((...-..(((((....)))))..-........(((.(((...(((((....)))))..))).)))))).. ( -10.50)
>DroSec_CAF1 859 93 - 1
AAUAGUUGAUCAGAAGUCUAAGUCUGAA-UAUUAUAUCCAUAUAAAAAAAACCUUGGCUGAUUCGCUUUGGCUAGCCAAGAAAAUGAGCAGAAU
.(((((...(((((........))))).-.))))).................((((((((....((....)))))))))).............. ( -17.40)
>DroSim_CAF1 859 93 - 1
AAUAGUUGAUCAGAAGUCUAAGUCUGAA-UAUUAUAUCCAUAUAAAAAAAACCUUGGCUGAUUCGCUUUGGCUAGCCAGGAAAAUGAGCAGAAU
.(((((...(((((........))))).-.))))).................((((((((....((....)))))))))).............. ( -17.10)
>DroEre_CAF1 867 90 - 1
AAUAGUUAAUCAGAAGAUGUAAUCUGAA-UAUUAUAACCAUUUAA---AAACCUUGGCUGAUUCGCUUUGGCUAGCCAAGAAAAUGAGCAGAAC
.(((((...(((((........))))).-.)))))..........---....((((((((....((....)))))))))).............. ( -17.40)
>DroYak_CAF1 872 91 - 1
AAUAGUUAGUCAGAAGUGUUAAUCUGAA-UAUUAUAACCAUAUAAA--AAACCUUGGCUGACUCGCAUUGGCUAGCCAAGAAUAUGAGCAGAAU
.(((((...(((((........))))).-.)))))...........--....((((((((.((......)).)))))))).............. ( -18.60)
>DroAna_CAF1 783 89 - 1
AAAGGUUAAACCAACCUAUUAAUUUUAGUUAAUAGAA---UCUGGA--CUACCUUGGCCGAAUCACUAUAGUUGACCAAGCAGAUUAGCAGAAA
...((.....))...((((((((....))))))))((---((((..--....(((((.(((..........))).)))))))))))........ ( -16.20)
>consensus
AAUAGUUAAUCAGAAGUCUUAAUCUGAA_UAUUAUAACCAUAUAAA__AAACCUUGGCUGAUUCGCUUUGGCUAGCCAAGAAAAUGAGCAGAAU
....(((..(((((........))))).........................((((((((....((....))))))))))......)))..... (-11.84 = -12.15 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:43 2006