Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 7,915,778 – 7,915,893 |
Length | 115 |
Max. P | 0.999588 |
Location | 7,915,778 – 7,915,893 |
---|---|
Length | 115 |
Sequences | 5 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 90.93 |
Mean single sequence MFE | -25.92 |
Consensus MFE | -24.84 |
Energy contribution | -25.00 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.16 |
Mean z-score | -2.19 |
Structure conservation index | 0.96 |
SVM decision value | 3.76 |
SVM RNA-class probability | 0.999588 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7915778 115 + 20766785 UAACAUUUGAUCUUGAGCCAAAAAGGAUUUCGGACUUAAAAAGAUU-UUAAAAGCUUUAAGCCAGUCUUUGUGUCACGAA-AAUAUCUUGAACUUUGGCUAGAGAUUAUAAGCCAAA .......(((((((.(((((((.((((((((((((....(((((((-......((.....)).)))))))..))).))))-...)))))....))))))).)))))))......... ( -29.20) >DroSec_CAF1 12717 116 + 1 UAACAUUUGAUCUUGAGCCAAAAAGGAUUUCGGACUUAAAAAGAUU-UUAAAAGCUUUAAGUCAGUCUUUGUGUCACGAAAAAUAUCUUGAACUUUGGCUAGAGAUUAUAAGCCAAA .......(((((((.(((((((.((((((((((((....(((((((-((((.....))))...)))))))..))).))))....)))))....))))))).)))))))......... ( -28.30) >DroSim_CAF1 13683 116 + 1 UAACAUUUGAUCUUGAGCCAAAAAGGAUUUCGGAUUUAAAACGAUUUUUAAAAGCUUUAAGUCAGUCUUUGUGUCACGAA-AAUAUCUUGAACUUUGGCUAGAGAUUAUAAGCCAAA .......(((((((.(((((((.((((((((((((.(((((((((((...........))))).)).)))).))).))))-...)))))....))))))).)))))))......... ( -26.40) >DroEre_CAF1 12470 106 + 1 UAACUUUUGAUCUUGAGCCAAAAAGGAUUUCGGGCUUAAAAAGAUU-UUAAAAGCUUUAAGUCAGUCUCCGUGUCACAAA-AAUAUCUUGAACUUUGGCUAAAGAUUA--------- .......(((((((.(((((((..(((.....((((((((......-........))))))))....)))......(((.-......)))...))))))).)))))))--------- ( -23.34) >DroYak_CAF1 15329 115 + 1 UAACAUUUGAUCUUGAGCCGAAAAGGAUUUCGGACUUAAAAAGAUU-UUAAAAGCUUUGAGUCAGUCUGUGUGUCACAAA-AAUAUCUUGAACUUUGGUUAAAGAUUACGAGCCAAA .......(((((((.(((((((.(((((....((((((((......-........))))))))....((((...))))..-...)))))....))))))).)))))))......... ( -22.34) >consensus UAACAUUUGAUCUUGAGCCAAAAAGGAUUUCGGACUUAAAAAGAUU_UUAAAAGCUUUAAGUCAGUCUUUGUGUCACGAA_AAUAUCUUGAACUUUGGCUAGAGAUUAUAAGCCAAA .......(((((((.(((((((.((((((((((((....(((((((.((((.....))))...)))))))..))).))))....)))))....))))))).)))))))......... (-24.84 = -25.00 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:39 2006