Locus 2112

Sequence ID 2R_DroMel_CAF1
Location 7,914,690 – 7,914,810
Length 120
Max. P 0.877429
window3500

overview

Window 0

Location 7,914,690 – 7,914,810
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 91.00
Mean single sequence MFE -34.04
Consensus MFE -26.90
Energy contribution -27.38
Covariance contribution 0.48
Combinations/Pair 1.14
Mean z-score -1.87
Structure conservation index 0.79
SVM decision value 0.90
SVM RNA-class probability 0.877429
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7914690 120 - 20766785
UUUUGGCUCGGGACAUUCGUGGAUAAUGGGCGGACUCCCUCCAACUGCCGGUCACUGGUUGCCACAGCGACCAAUUAAUCCAGAACAUCUCGAAGCUCAUCAUAAAUCGAUUCUUCCACA
....(((((((((..(((.(((((....(((((...........)))))((((.(((.......))).)))).....))))))))..))))).))))....................... ( -35.90)
>DroSec_CAF1 11595 120 - 1
UUUUGGCUCGGGACAUACGUGGAUAGUGGACGGACUCCCUCCAACUGCCGGUCACAGGUUGCCACAGCGACCAGUUGAUCCAGUACAUCUCGAAGCUAAUCAAAAAUCGAUUCUUCCAUA
..(((((((((((..(((..((.(((((((.((....))))).))))))((((((.((((((....)))))).).)))))..)))..))))).))))))..................... ( -38.60)
>DroSim_CAF1 12559 120 - 1
UUUUGGCUCGGGACAUACGUGGAUAAUGGACGGACUCCCUCCAACUGCCGGUCACAGGUUGCCACAGCGACCAGUUGAUCCAGUACAUCUCGAAGCUAAUCAAAAAUCGAUUCUUCCACA
..(((((((((((..(((..((....((((.((....))))))....))((((((.((((((....)))))).).)))))..)))..))))).))))))..................... ( -36.50)
>DroEre_CAF1 11326 120 - 1
UUUUGGCUCGAGACAUACGUGGAUACUUGACGGACUCCCUCCAACUGCCAGUCACAGGUUGCCACAAGGACCAAUUGAUCCAUAACAUCUCGAAGCUCAUUAUAAAUCGAUUCUUCCAAC
....(((((((((.....((((..(((((...((((..(.......)..)))).)))))..))))..(((.(....).)))......))))).))))....................... ( -27.90)
>DroYak_CAF1 14198 120 - 1
UUUUGGCUCGAGACAUACGUGGAUACUUGACGGACUCCCUCCAACUGCCGGUCACAGGUUGCCACAGCGACCAAUUGAUCCAUAACAUCUCGAAGUUCGUCGUAAAUCGAUUCUUCCAAC
..((((.((((((.....((((((...(((((((.....)))..(....)))))..((((((....)))))).....))))))....)))))).....((((.....))))....)))). ( -31.30)
>consensus
UUUUGGCUCGGGACAUACGUGGAUAAUGGACGGACUCCCUCCAACUGCCGGUCACAGGUUGCCACAGCGACCAAUUGAUCCAGAACAUCUCGAAGCUCAUCAUAAAUCGAUUCUUCCAAA
....(((((((((..(((.(((((....(((((.(...........))).)))...((((((....)))))).....))))))))..))))).))))....................... (-26.90 = -27.38 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:37 2006