Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 7,914,410 – 7,914,570 |
Length | 160 |
Max. P | 0.855023 |
Location | 7,914,410 – 7,914,530 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 87.83 |
Mean single sequence MFE | -34.20 |
Consensus MFE | -25.62 |
Energy contribution | -25.62 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.23 |
Mean z-score | -2.07 |
Structure conservation index | 0.75 |
SVM decision value | 0.80 |
SVM RNA-class probability | 0.855023 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7914410 120 - 20766785 GUUGUUGUGGUAAACCAUAACCUUGGUUGGGAUGCGGAUAUCUCGAGUUCGUACCCAAAUAUACAAUGUGGUAUUUGACUUUAGAAAUAUAUUUUCUGGAUCCUGCAUGAUUUCAAUAUG ...(((((((....))))))).(((((((((.(((((((.......)))))))))))).......(((..(.....((.((((((((.....)))))))))))..)))....)))).... ( -30.00) >DroSec_CAF1 11315 120 - 1 AUUGUUGUGGUAAACCAUAACCUUGGUUGGGAUGCGGAUGUCACGAGUUCGUACCCAAAUAUAAAGCGUGGUAUUGGGCUUUAGAAAUAUAUUUUCUGGAUCCUGUUUGAUUGCAAUAUG ..(((((..((..(((((...(((..(((((.(((((((.......)))))))))))).....))).)))))...(((.((((((((.....)))))))).))).....))..))))).. ( -35.50) >DroSim_CAF1 12279 120 - 1 AUUGUUGUGGUAAACCAUAACCUUGGUUGGGAUGCGAAUAUCACGAGUUCGUACCCAAAUAUAAAGCGUGGUAUUGGGCUUUAGAAAUAUAUUUUCUGGAUCCUGUUUGAUUGCAAUAUG ..(((((..((..(((((...(((..(((((.(((((((.......)))))))))))).....))).)))))...(((.((((((((.....)))))))).))).....))..))))).. ( -35.70) >DroEre_CAF1 11046 120 - 1 GUUGUUGUGGGAAACCAUAAUCGUAGUUGGGAUGCGGAUAUCUCGAGUUCGUACCCAAAUAUACAGUGUGCUAUUAGACUUCAGAAUUAUAUGUUCGGGAUCCUGCAUGAUUGUUAUAUG ...(((((((....))))))).....(((((.(((((((.......))))))))))))(((((((((((((.....((.(((.((((.....)))).)))))..)))).)))).))))). ( -33.80) >DroYak_CAF1 13918 120 - 1 GUUGUUGUGGGAAACCAUUACCGUGGUUGGGAUGCGGAUAUCUCGAGUUCGUACCCAAAUAUAUAGUGUCGUAUUCGUCUUGAGAAAUAUGUGUUCAGGAUCCUGCAAGAUUGCGAUAUG ...((.((((....)))).)).(((.(((((.(((((((.......)))))))))))).)))...((((((((.((((((((((.........)))))))).......)).)))))))). ( -36.01) >consensus GUUGUUGUGGUAAACCAUAACCUUGGUUGGGAUGCGGAUAUCUCGAGUUCGUACCCAAAUAUAAAGUGUGGUAUUGGACUUUAGAAAUAUAUUUUCUGGAUCCUGCAUGAUUGCAAUAUG ...(((((((....))))))).(((.(((((.(((((((.......))))))))))))...)))...............((((((((.....)))))))).................... (-25.62 = -25.62 + -0.00)
Location | 7,914,450 – 7,914,570 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 89.08 |
Mean single sequence MFE | -39.82 |
Consensus MFE | -32.84 |
Energy contribution | -32.72 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.12 |
Mean z-score | -1.34 |
Structure conservation index | 0.82 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.514479 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7914450 120 - 20766785 CCUCGAUGCGGCGGAGGAACCACAUCGGAAAUCGCCCGGCGUUGUUGUGGUAAACCAUAACCUUGGUUGGGAUGCGGAUAUCUCGAGUUCGUACCCAAAUAUACAAUGUGGUAUUUGACU ((((.........)))).((((((((((.......))).((..(((((((....)))))))..)).(((((.(((((((.......)))))))))))).......)))))))........ ( -37.50) >DroSec_CAF1 11355 120 - 1 CCUCGAUGCGGCGAAGGAACCACCUCGGAAAUCGCCCGGCAUUGUUGUGGUAAACCAUAACCUUGGUUGGGAUGCGGAUGUCACGAGUUCGUACCCAAAUAUAAAGCGUGGUAUUGGGCU .((((((((.(((....(((((..((((.......))))....(((((((....)))))))..)))))(((.(((((((.......))))))))))..........))).)))))))).. ( -41.50) >DroSim_CAF1 12319 120 - 1 CCUCGAUGCGGCGAAGGAACCACCUCGGAAAUCGCCCGGCAUUGUUGUGGUAAACCAUAACCUUGGUUGGGAUGCGAAUAUCACGAGUUCGUACCCAAAUAUAAAGCGUGGUAUUGGGCU .((((((((.(((....(((((..((((.......))))....(((((((....)))))))..)))))(((.(((((((.......))))))))))..........))).)))))))).. ( -41.70) >DroEre_CAF1 11086 120 - 1 ACUCGAUGCGGCGAAGGAACCAUUUUGGAAAUCGUCCGGCGUUGUUGUGGGAAACCAUAAUCGUAGUUGGGAUGCGGAUAUCUCGAGUUCGUACCCAAAUAUACAGUGUGCUAUUAGACU ...(((((((((((.....((.....))...))).)).))))))((((((....))))))..(((.(((((.(((((((.......))))))))))))...)))(((.((....)).))) ( -36.60) >DroYak_CAF1 13958 120 - 1 CUUCGAUGCGGCGCAGGAACCAUUUCGGAAACCGGCCGGCGUUGUUGUGGGAAACCAUUACCGUGGUUGGGAUGCGGAUAUCUCGAGUUCGUACCCAAAUAUAUAGUGUCGUAUUCGUCU ...(((((((((((...((((((.((((.......))))....((.((((....)))).)).))))))(((.(((((((.......)))))))))).........)))))))).)))... ( -41.80) >consensus CCUCGAUGCGGCGAAGGAACCACCUCGGAAAUCGCCCGGCGUUGUUGUGGUAAACCAUAACCUUGGUUGGGAUGCGGAUAUCUCGAGUUCGUACCCAAAUAUAAAGUGUGGUAUUGGACU ....(((((.(((....(((((..((((.......))))....(((((((....)))))))..)))))(((.(((((((.......))))))))))..........))).)))))..... (-32.84 = -32.72 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:36 2006