Locus 2110

Sequence ID	2R_DroMel_CAF1
Location	7,911,340 – 7,911,434
Length	94
Max. P	0.562155

overview

Window 7

Location	7,911,340 – 7,911,434
Length	94
Sequences	5
Columns	94
Reading direction	reverse
Mean pairwise identity	89.15
Mean single sequence MFE	-24.80
Consensus MFE	-19.96
Energy contribution	-20.08
Covariance contribution	0.12
Combinations/Pair	1.16
Mean z-score	-1.41
Structure conservation index	0.80
SVM decision value	0.06
SVM RNA-class probability	0.562155
Prediction	RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7911340 94 - 20766785
UCACUGGUAGUUCACAGGACUCCAGAAAUAAUGCAUUAAUCGAAAUGCCACGAGUGAUCAGAACUUUUCGUGGUGAUAGGGGAUCUGAACACUU
...((((.((((.....)))))))).......(((((......)))))...(((((.(((((.(((.((.....)).)))...))))).))))) ( -25.00)
>DroSec_CAF1 8244 94 - 1
UCACUGGCAGGUUACAGGAUUCCAGAAAUAGGGCAUUGAUCAAAAUGCCACGAGUAAUCAGAACUUUUCGUGGCGAUAGGGGAUCUGAACACUU
..........(((...(((((((.......((.......))....(((((((((............)))))))))....))))))).))).... ( -22.90)
>DroSim_CAF1 7949 94 - 1
UCACGGGCAGGUUACAGGGUUCCAGAAAAAAGGCAUUAAUCAAAAUGCCACGAGUGAUCAGAACUUUUCGUGGCGAUAGGGGAUCUGAACACUU
....(..(((((..(...(((((((((((..((((((......))))))..((....)).....))))).))).)))..)..)))))..).... ( -25.30)
>DroEre_CAF1 7970 94 - 1
UUAUUGGUAGGUUACAGGAUUCCAGAAAUAUGGCAUUGAUUAAAAUGCCACGAGUGAUCAGAACUCUUCGUGGUGAUUGGGGAUCUGAGCACUU
...((((...(((....))).)))).....(((((((......))))))).(((((.(((((..((((((.......))))))))))).))))) ( -25.50)
>DroYak_CAF1 10848 94 - 1
UUACUGAAAGGUUACAAGAUUCCAGAAACAAGGCAUUGAUCAAAAUGCCACGAGUGAUCAGAACUUUUCGUGGUGAUUGGGGAUCUGAACACUU
.......((((((...(((((((........((((((......))))))......(((((..((.....))..))))).))))))).))).))) ( -25.30)
>consensus
UCACUGGCAGGUUACAGGAUUCCAGAAAUAAGGCAUUGAUCAAAAUGCCACGAGUGAUCAGAACUUUUCGUGGUGAUAGGGGAUCUGAACACUU
...((((..((((....))))))))......((((((......))))))..(((((.(((((.(((((((...)))..)))).))))).))))) (-19.96 = -20.08 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:33 2006