Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,509,585 – 1,509,772 |
Length | 187 |
Max. P | 0.787976 |
Location | 1,509,585 – 1,509,679 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 93.01 |
Mean single sequence MFE | -26.71 |
Consensus MFE | -19.78 |
Energy contribution | -20.86 |
Covariance contribution | 1.08 |
Combinations/Pair | 1.08 |
Mean z-score | -2.09 |
Structure conservation index | 0.74 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.680492 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1509585 94 + 20766785 UUGGUUACAACACUC-AAACAGACUGACAAAUAGACAUGCGUCGAUGGCUAGGGGAGGUUAGCGAAGGACAAACAUAUCUGGCCAUUCGGCCAUA (..(((.........-.....)))..).........(((.(((((((((((((....(((.((....).).)))...)))))))).)))))))). ( -24.34) >DroSec_CAF1 40626 94 + 1 GUGGUUACAACACUC-AAACAGACUGACAAAUAGACAUGCGUCGAUGGCUAGGAGAGGUUAGCGAAGGACACACAUAUCUGGCCAUUCGGCCAUA (((.......)))..-....................(((.(((((((((((((....((...(....)..)).....)))))))).)))))))). ( -23.10) >DroSim_CAF1 44925 94 + 1 GUGGUUACAACACCC-AAACAGACUGACAAAUAGACAUGCGUCGAUGGCUAGGAGAGGUUAGCGAAGGACAAACAUAUCUGGCCAUUCGGCCAUA (((.......)))..-....................(((.(((((((((((((....(((.((....).).)))...)))))))).)))))))). ( -24.20) >DroEre_CAF1 49241 92 + 1 GUGGUUACAACACUCGAAACAGAGUGACAAAUAGACAUGCGUGGAUGGCUAG--GAGGUUAGCGAAGGACAAACACAU-UGGCCAUUCGGCCAUA ((((((....(((((......)))))................((((((((((--...(((.((....).).)))...)-))))))))))))))). ( -30.80) >DroYak_CAF1 64530 94 + 1 GUGGUUACAACACUC-AAACAGAGUGACAAAUAGACAUACGUGAAUGGCUAGGGGAGGUAAGCGAAGGACAAACACAUCUGGCCAUUCAGCCAUA ((((((....(((((-.....)))))................(((((((((((....((...(....)....))...))))))))))))))))). ( -31.10) >consensus GUGGUUACAACACUC_AAACAGACUGACAAAUAGACAUGCGUCGAUGGCUAGGAGAGGUUAGCGAAGGACAAACAUAUCUGGCCAUUCGGCCAUA ((((((...........................(((....)))((((((((((....(((.((....).).)))...)))))))))).)))))). (-19.78 = -20.86 + 1.08)
Location | 1,509,639 – 1,509,740 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.14 |
Mean single sequence MFE | -29.18 |
Consensus MFE | -21.64 |
Energy contribution | -22.40 |
Covariance contribution | 0.76 |
Combinations/Pair | 1.14 |
Mean z-score | -1.71 |
Structure conservation index | 0.74 |
SVM decision value | 0.58 |
SVM RNA-class probability | 0.787976 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1509639 101 + 20766785 AGGUUAGCGAAGGACAAACAUAUCUGGCCAUUCGGCCAUAA-------------------ACCUAGUGUUCUAUACAUCCAAACUUCCCGUUUUGGGUGAAGUAAGCUGCUCGCCAGUGA .(((.((((.((((((........(((((....)))))...-------------------......))))))...((((((((........))))))))........)))).)))..... ( -30.93) >DroSec_CAF1 40680 101 + 1 AGGUUAGCGAAGGACACACAUAUCUGGCCAUUCGGCCAUAA-------------------ACCCAGUGUUCUAUACAUCCGAACUUCCCGUUUCGGGCGAAGUAAACUGCCAGCCAGUGA .((((.(((.(((((((.......(((((....)))))...-------------------.....)))))))..........(((((((......)).)))))....))).))))..... ( -30.66) >DroSim_CAF1 44979 101 + 1 AGGUUAGCGAAGGACAAACAUAUCUGGCCAUUCGGCCAUAA-------------------ACCUAGUGUUCUAUACAUCCGAACUUCCCGUUUUGGGCGAAGUAAACUGCCAGCCAGUGA .((((.(((.((((((........(((((....)))))...-------------------......))))))..........(((((((......)).)))))....))).))))..... ( -28.73) >DroEre_CAF1 49294 119 + 1 AGGUUAGCGAAGGACAAACACAU-UGGCCAUUCGGCCAUAAGCACUCCCUCUUAACCCAGGCCUAGAGUUCUAUACAUCCAAACUUUCAGUUUUGGGUGAUGUAAACUGCUCACCAGUGA .((((((.((.(((.........-(((((....))))).......))).))))))))........((((..((((((((((((........)))))))).))))....))))........ ( -31.99) >DroYak_CAF1 64584 120 + 1 AGGUAAGCGAAGGACAAACACAUCUGGCCAUUCAGCCAUAAAAACUUCAUCCACACAAAAACCUAGGGUCCUAUACAUCCAAAAUUCCCGUUCUGGCUGAAGUAAACUGCUCACCAGUGA .(((.((((...............((((......)))).....((((((.(((.((.........((((.......)))).........))..))).))))))....)))).)))..... ( -23.57) >consensus AGGUUAGCGAAGGACAAACAUAUCUGGCCAUUCGGCCAUAA___________________ACCUAGUGUUCUAUACAUCCAAACUUCCCGUUUUGGGUGAAGUAAACUGCUCGCCAGUGA .(((.((((....((.........(((((....))))).....................................((((((((........))))))))..))....)))).)))..... (-21.64 = -22.40 + 0.76)
Location | 1,509,679 – 1,509,772 |
---|---|
Length | 93 |
Sequences | 3 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 83.46 |
Mean single sequence MFE | -19.40 |
Consensus MFE | -15.69 |
Energy contribution | -16.47 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.05 |
Mean z-score | -1.46 |
Structure conservation index | 0.81 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.516964 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1509679 93 - 20766785 AAAAAAAAAAAAAAAACAAAGGCCAUCCAAAAUCACUGGCGAGCAGCUUACUUCACCCAAAACGGGAAGUUUGGAUGUAUAGAACACUAGGUU ....................(((((((((((......(((.....)))..((((.((......)))))))))))))...(((....))))))) ( -16.70) >DroSec_CAF1 40720 80 - 1 AA-------------ACAAAGGCGAGCCAAAAUCACUGGCUGGCAGUUUACUUCGCCCGAAACGGGAAGUUCGGAUGUAUAGAACACUGGGUU .(-------------((..((((.(((((.......))))).)).((((....((.(((((.(.....)))))).))....)))).))..))) ( -22.10) >DroSim_CAF1 45019 80 - 1 AA-------------ACAAAGGCGAGCCAAAAUCACUGGCUGGCAGUUUACUUCGCCCAAAACGGGAAGUUCGGAUGUAUAGAACACUAGGUU .(-------------((..((((.(((((.......))))).))...........(((.....)))..((((.........)))).))..))) ( -19.40) >consensus AA_____________ACAAAGGCGAGCCAAAAUCACUGGCUGGCAGUUUACUUCGCCCAAAACGGGAAGUUCGGAUGUAUAGAACACUAGGUU .....................((.(((((.......))))).)).....(((((.((......)))))))((((.(((.....)))))))... (-15.69 = -16.47 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:34 2006