Locus 2109

Sequence ID 2R_DroMel_CAF1
Location 7,898,833 – 7,898,934
Length 101
Max. P 0.600926
window3496

overview

Window 6

Location 7,898,833 – 7,898,934
Length 101
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 84.50
Mean single sequence MFE -26.95
Consensus MFE -20.25
Energy contribution -21.37
Covariance contribution 1.11
Combinations/Pair 1.17
Mean z-score -1.98
Structure conservation index 0.75
SVM decision value 0.14
SVM RNA-class probability 0.600926
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7898833 101 + 20766785
AAGCAUUGACAGCG-AAAUGUGUGCGAAAGCCCACGCGAAAAUGAGACUAAUUUAUAGGCAUUGUUAGGAUGCACAGCCUAUAAAGAUUUCAAUUGUUGUGC
........((((((-(...(((.((....)).))).......(((((....(((((((((..(((......)))..)))))))))..))))).))))))).. ( -30.90)
>DroPse_CAF1 3168 101 + 1
UCGCAUUGACAGUUCCAGUGUGUGUGAAAACCCACGCAAAGUCGGGGGUAAUUUAUGGACAGAAAUACAAUGC-CAGCCUAUAAAGAUUUCAUUUGUUUUGC
..(((..(((((.....(((((.((....)).))))).(((((..((((......(((.((.........)))-)))))).....)))))...))))).))) ( -21.40)
>DroSim_CAF1 3268 101 + 1
AAGCAAUGACAGCG-AAAUGUGUGCGAAAGCCCACGCGAAAAUGAGACUAAUUUAUAGGCAUUGUUUGGAUGCACAGCCUAUAAAGAUUUCAAUUGUUGUGC
........((((((-(...(((.((....)).))).......(((((....(((((((((..(((......)))..)))))))))..))))).))))))).. ( -30.90)
>DroEre_CAF1 3209 101 + 1
AAGCAUUGACAGCG-AAAUGUGUGCGAAAGCCCACGCGAAAAUGAGACUAAUUUAUAGGCAUUGCUACAAUGCACAGCCUAUAAAGAUUUCAAUUGUUGUGC
........((((((-(...(((.((....)).))).......(((((....(((((((((..(((......)))..)))))))))..))))).))))))).. ( -33.00)
>DroYak_CAF1 3266 101 + 1
AAGCAUUGACAGCG-AAAUGUGUGCGAAAGCCCACGCGAAAAUGAGACUAAUUUAUGAGCAUUGUUAGAAUGCACAGCCUAUAAAGAUUUCAAUUGUUGUGC
........((((((-(...(((.((....)).))).......(((((....((((((.((..(((......)))..)).))))))..))))).))))))).. ( -24.10)
>DroPer_CAF1 3162 101 + 1
UCGCAUUGACAGUUCCAGUGUGUGUGAAAACCCACGCAAAGUCGGGGGUAAUUUAUGGACAGAAAUACAAUGC-CAGCCUAUAAAGAUUUCAUUUGUUUUGC
..(((..(((((.....(((((.((....)).))))).(((((..((((......(((.((.........)))-)))))).....)))))...))))).))) ( -21.40)
>consensus
AAGCAUUGACAGCG_AAAUGUGUGCGAAAGCCCACGCGAAAAUGAGACUAAUUUAUAGGCAUUGUUACAAUGCACAGCCUAUAAAGAUUUCAAUUGUUGUGC
..(((.((((((.......(((.((....)).)))........((((....(((((((((..(((......)))..)))))))))..))))..))))))))) (-20.25 = -21.37 +   1.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:32 2006