Locus 2107

Sequence ID 2R_DroMel_CAF1
Location 7,894,806 – 7,894,923
Length 117
Max. P 0.530647
window3492

overview

Window 2

Location 7,894,806 – 7,894,923
Length 117
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 81.71
Mean single sequence MFE -51.55
Consensus MFE -33.49
Energy contribution -33.10
Covariance contribution -0.39
Combinations/Pair 1.29
Mean z-score -1.53
Structure conservation index 0.65
SVM decision value -0.01
SVM RNA-class probability 0.530647
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7894806 117 - 20766785
CUCCACAUCGUCUUCCUGGCGGAUGAUGGCCCAUCCGUUGCCUCCUUCGCCGGUGCCACGUCCCUUGGGAAGAUUGGCAGUUGGAUCGGCAAUAGCCGGCGGCGCUGCAGUGGUGGG
(.((((...(((((((..(.(((((.((((....(((..((.......))))).))))))))).)..)))))))..((((((.(.(((((....)))))).).))))).)))).).. ( -50.40)
>DroPse_CAF1 1741 117 - 1
CUCGACAUCAUCUUCCAGUCGGAUGAUGGCCCAACCAUUGCCGCCUUCGCCUGUGCCCCGUCCCUUGGGCAAAUUGGCGGUCACAUCGACGACGGCUGGCGGUGGAGGUAUGGUUGG
.....((((((((.......))))))))..((((((((.(((.((.(((((..(((((........)))))....(((.(((........))).)))))))).)).))))))))))) ( -52.70)
>DroSec_CAF1 3362 117 - 1
CUCCACAUCGUCUUCCUGGCGGAUGAUGGCCCAUCCGUUGCCUCCUUCGCCGGUGCCACGUCCCUUGGGAAGAUUGGCAGUUGGAUCGGCAAUAGCUGGCGGCGGUGCAGUGGUGGG
.....((((((((.......)))))))).((((.(((((((..((.((((((((((((..(((....)))....)))).((((......)))).)))))))).)).))))))))))) ( -50.30)
>DroEre_CAF1 3622 117 - 1
CUCCACAUCGUCUUCCUGGCGGAUGAUGGCCCAUCCAUUGCCUCCUUCGCCGGUGCCACGUCCCUUAGGAAGAUUGGCAGUUGGAUCGAUAAUCGCUGGCGGCGGUGCAGUGGUGGG
.....((((((((.......)))))))).((((.(((((((..((.((((((((((((..(((....)))....)))).....(((.....))))))))))).)).))))))))))) ( -50.70)
>DroAna_CAF1 4340 117 - 1
CUCCACGUCGUCCUCCUGCCGGAUGAUAGCCCACCCAUUGCCACCUUCCCCAGUGCCGCGGCCUUUUGGUAAGUUGGCGGUGGGAUCUGGCACCGCCGGUGGAGCAGGCGUAGUGGG
..((((..((((((((.(((((.((...(((..((((((((((.(((((..((.((....))))...)).))).))))))))))....)))..)))))))))))..))))..)))). ( -54.00)
>DroPer_CAF1 1760 117 - 1
CUCGACAUCAUCUUCCAGUCGGAUGAUGGCCCAACCAUUGCCGCCUUCGCCUGUGCCCCGUCCCUUGGGCAAAUUGGCGGUCACAUCGACGACGGCUGGCGGUGGAGGUAUGGUGGG
.....((((((((.......)))))))).((((.((((.(((.((.(((((..(((((........)))))....(((.(((........))).)))))))).)).))))))))))) ( -51.20)
>consensus
CUCCACAUCGUCUUCCUGGCGGAUGAUGGCCCAUCCAUUGCCUCCUUCGCCGGUGCCACGUCCCUUGGGAAAAUUGGCAGUUGGAUCGACAACAGCUGGCGGCGGAGCAGUGGUGGG
.....((((((((.......)))))))).((((.((((.....((.(((((.((((((..(((....)))....)))).(((........))).)).))))).))....)))))))) (-33.49 = -33.10 +  -0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:28 2006