Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 7,870,898 – 7,870,997 |
Length | 99 |
Max. P | 0.833240 |
Location | 7,870,898 – 7,870,997 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 80.45 |
Mean single sequence MFE | -23.12 |
Consensus MFE | -19.73 |
Energy contribution | -19.48 |
Covariance contribution | -0.25 |
Combinations/Pair | 1.30 |
Mean z-score | -1.60 |
Structure conservation index | 0.85 |
SVM decision value | 0.72 |
SVM RNA-class probability | 0.833240 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7870898 99 - 20766785 ------UAUUUCG-----GAAGUUCUUAAACUCACUGCAAAAUCAAUAUGAAACUUUAAGGGGGUAUUAUCCGCACCGUAGGCAAAGAAUAUUUGAUAUGGCGGUGAGUA ------.....(.-----...).......(((((((((...((((((((....(((...(((((......)).).))..)))......))).)))))...))))))))). ( -23.40) >DroSec_CAF1 2957 99 - 1 ------UUUAUAG-----AAAGUUAUUAAACUUACUGCAAAGUCAAUAUGAAACUUUAAGGGGGAAUUAUCCGAGCCGUAGGCGAAGAAUAUUUGAUAUGGCGGUGAGUA ------.......-----...........(((((((((...((((((((....((((.....(((....)))..(((...))))))).))).)))))...))))))))). ( -23.40) >DroSim_CAF1 433 99 - 1 ------UUUAUAG-----AAAGUUCUUAAACUUACUGCAAAGUCAAUAUGAAACUUUAAGGGGGAAUUAUCCGAGCCGUAGGCAAAGAAUAUUUGAUAUGGCGGUGAGUA ------.......-----...........(((((((((...((((((((....((((.....(((....)))..(((...))))))).))).)))))...))))))))). ( -23.00) >DroEre_CAF1 434 105 - 1 AUAGAAUAUAGAG-----GAUGUGGUUAAACUCACUGCAAAAUCAAUAUGAAACUUUAAGGGAGAACUAUCAUUGCCAUAGGCGAAGAAUAUUUGAUAUGGCGGUGGGUA .............-----...........(((((((((...(((((.......(((.....))).....((.(((((...))))).))....)))))...))))))))). ( -23.70) >DroYak_CAF1 433 99 - 1 ------UAUCUAG-----GAGGUGGUGGAACUCACUGCAAAAUCAAUAUGAAACUUUAAGGGAGAACUGUCCUUGCCAUAGGCAAAGAAUAUUUGAUAUGGCGGUGAGUA ------..((((.-----.......))))(((((((((...((((((((....((((.(((((......)))))(((...))))))).))).)))))...))))))))). ( -27.00) >DroAna_CAF1 433 104 - 1 ------CUUAUAAAUUUCAAGGUUUUCCGACCUACCGCAAGAUCAAUGUGAAACUUCAAGGGAGAAUUAUCAUUGCCAUAGGCAAAGAAUAUUUGAUAAGGUGCCGAGUA ------.........(((.(((((....)))))...(((..(((((.......(((.....))).....((.(((((...))))).))....)))))....))).))).. ( -18.20) >consensus ______UAUAUAG_____AAAGUUCUUAAACUCACUGCAAAAUCAAUAUGAAACUUUAAGGGAGAAUUAUCCGUGCCAUAGGCAAAGAAUAUUUGAUAUGGCGGUGAGUA .............................(((((((((...((((((((....((((...(((......)))..(((...))))))).))).)))))...))))))))). (-19.73 = -19.48 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:24 2006