Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 7,870,008 – 7,870,106 |
Length | 98 |
Max. P | 0.913503 |
Location | 7,870,008 – 7,870,106 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 80.82 |
Mean single sequence MFE | -24.44 |
Consensus MFE | -17.50 |
Energy contribution | -18.06 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.26 |
Mean z-score | -2.06 |
Structure conservation index | 0.72 |
SVM decision value | 1.09 |
SVM RNA-class probability | 0.913503 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7870008 98 + 20766785 UAACUUGGAUAUACUUGCAGGAUACUAUUGGGUUGUAUUGGUGCAAGUCCUGCAACUAGUGCCCUUCCUGUACUUCUGCUACCUAUUCUACACUUUUC .....((((.......(((((((((....(((..(((((((((((.....))).)))))))))))....))).)))))).......))))........ ( -25.24) >DroSim_CAF1 12671 98 + 1 UAACUUGGAUAUACUUGCAGGAUACUAUUGGGUGCUGUUGGUGCAAGUCCUGCAACUAGUGCCCUUCCUGUACUUCUGCUACCUGUUCUACACUUUUC .....((((.......(((((((((....(((..(((....((((.....))))..)))..))).....))).)))))).......))))........ ( -27.04) >DroEre_CAF1 14060 98 + 1 UAACUAGUGCAUUAUUGCAGGAUAUUAUUGGGUGCUGAUGGUGCAAGUCCUGCAACUAGUGCCCUUCCUGUACUUUAGCUCCCUCUUCUACACUUUUC ......(.((.....(((((((.......(((..(((....((((.....))))..)))..))).))))))).....)).)................. ( -24.10) >DroYak_CAF1 12961 98 + 1 UAACUAGUAUUUACGUGCAGGAUACUAUUGGGUGCUGAUGGUGCAGGUCCUGCAACUAGUGCCCUUCCUGUACUUUUGCUACCUCUUCUACACUUUCC ....(((((.....((((((((.......(((..(((....(((((...)))))..)))..))).))))))))...)))))................. ( -30.00) >DroAna_CAF1 12245 96 + 1 AAA--UGUUUGUCUUUCUAGGAUACCUUUGGGUUUUCGCAGUUCAAAUCCUACAGGUGAUGCCUUUCCUGUACUUCUGCUAUCUGUUCUACACAUUCC .((--(((...........(((.(((....))).)))((((.........((((((..........))))))...))))............))))).. ( -15.80) >consensus UAACUUGUAUAUACUUGCAGGAUACUAUUGGGUGCUGAUGGUGCAAGUCCUGCAACUAGUGCCCUUCCUGUACUUCUGCUACCUCUUCUACACUUUUC ...............(((((((.......((((((((....((((.....))))..)))))))).))))))).......................... (-17.50 = -18.06 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:23 2006