Locus 2102

Sequence ID 2R_DroMel_CAF1
Location 7,865,041 – 7,865,161
Length 120
Max. P 0.851313
window3482

overview

Window 2

Location 7,865,041 – 7,865,161
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 77.08
Mean single sequence MFE -37.38
Consensus MFE -18.77
Energy contribution -19.77
Covariance contribution 1.00
Combinations/Pair 1.33
Mean z-score -2.42
Structure conservation index 0.50
SVM decision value 0.79
SVM RNA-class probability 0.851313
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7865041 120 - 20766785
CUUGAGUUUUUUCAUCACAUCGCUGAGACCACUCAUCAAACUGUGGCCGCAGAGCGCGGCACACCACUCUGGCUUCAUGGCCACCAUUUUGGUGCAUAUGGCAACAUAGCAGCUAAUUAC
..(((((..(((((.(.....).)))))..))))).......((((((((.....))))).))).....(((((....))))).....(((((((.((((....))))))).)))).... ( -37.30)
>DroEre_CAF1 9184 120 - 1
CUGGAGUGUUUUCAACACAUCACUGAGACCAGUCAUAAAGCUGUGCCCGCACAACGUGGCACACCACUCCGGGUUAAGGGCCACCAUCUUAGUGCAUAUGGCAACAUAGCAGCUAAUUAC
((((((((.............((((....))))........((((((((.....)).)))))).)))))))).....((....))...(((((((.((((....))))))).)))).... ( -38.50)
>DroYak_CAF1 8005 120 - 1
CUGGAGUGUUUUCAUCACAUCACUGAGACCAGUCAUGAAGCUGUGCCCGCACAGCGUGGCACACCACUCAGGGUUAAGGGCCACCAUCUUGGUGCAUAUGGCAACAUAGCAGCUAAUUAC
((.(((((.........(((.((((....)))).)))....(((((((((...))).)))))).))))).)).....((....))...(((((((.((((....))))))).)))).... ( -37.80)
>DroAna_CAF1 7319 120 - 1
CGGCGGAAUCUUCAUGAUGUCACUAAGGCAGUUCAUGAAACUAUGCUCACACAAAGUCGCACACCACUCUGGACGCAGCACCACUAGCUGCGAGCAAAUUCCGACAUAGCAACUUAGUAU
.(.((((((.(((((((((((.....))))..)))))))....(((((.......(((.((........)))))(((((.......)))))))))).)))))).)............... ( -35.90)
>consensus
CUGGAGUGUUUUCAUCACAUCACUGAGACCAGUCAUGAAACUGUGCCCGCACAACGUGGCACACCACUCUGGGUUAAGGGCCACCAUCUUGGUGCAUAUGGCAACAUAGCAGCUAAUUAC
((((((((.(((((.........))))).............((((.((((.....)))))))).)))))))).((((((.......)))))).((.((((....)))))).......... (-18.77 = -19.77 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:18 2006