Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 7,861,525 – 7,861,630 |
Length | 105 |
Max. P | 0.924869 |
Location | 7,861,525 – 7,861,630 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 74.45 |
Mean single sequence MFE | -37.77 |
Consensus MFE | -22.99 |
Energy contribution | -23.60 |
Covariance contribution | 0.61 |
Combinations/Pair | 1.24 |
Mean z-score | -1.77 |
Structure conservation index | 0.61 |
SVM decision value | 1.16 |
SVM RNA-class probability | 0.924869 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7861525 105 - 20766785 AUACGGAUGAUCAGUUCGGUGAGCUGCAACUGCAACUCAA------------CG---CUAUUUCGUGGCAAAUCAAUCAUGCUCUUCAUGGUGGCCACAUCGUCCAAGCACGGAUGCGAC ....(((((((.....((.((((.(((....))).)))).------------))---.......(((((......((((((.....)))))).))))))))))))..(((....)))... ( -33.10) >DroSec_CAF1 4444 105 - 1 AUGCGGAUGAUCAGUUCGGUGAGCUGCAACUGCAACUCAA------------CG---CCAUUUCGUGGCAUAUCAAUCAUGUUCUUCAUGGUGGCCACAUCGUCCAAGCACGGAUAAGAC .((((((((((......((((((.(((....))).)))..------------.)---)).....(((((......((((((.....)))))).))))))))))))..))).......... ( -33.40) >DroSim_CAF1 4649 105 - 1 AUGCGGAUGAUCAGUUCGGUGAGCUGCAACUGCAACUCAA------------CG---CCAUUUCGUGGCAUAUCAAUCAUGUUCUUCAUGGUGGCCACAUCGUCCAAGCACGGAUAAGAC .((((((((((......((((((.(((....))).)))..------------.)---)).....(((((......((((((.....)))))).))))))))))))..))).......... ( -33.40) >DroEre_CAF1 5635 117 - 1 AUCCGGAUGAUCAGAUGGGUGAGCUGCUCGUGCAUCUCAAGAGCAUUGGUGUCG---CCAUUUCGUGGCAAAUCGAUCAUGCUCUUCAUGCUGGCCACAUCGUCCGAGCCCGGACGCGAC ...((........(((((((.((((((....)))....((((((((((((...(---((((...)))))..)))))...)))))))...))).))).))))(((((....))))).)).. ( -42.70) >DroYak_CAF1 4456 117 - 1 AUCCGGAUGAUCAGAUGGGUGAGCUGCACGUGCAGCUCGAGAGCAUUGGUGACG---CCAUUUCGUGGCAAAUCGAUCAUGCUCUUCAUGGUGGCCACAUCGUCCGGGCCCGGACGCGAC ...((........((((((((((((((....)))))))((((((((.(....)(---((((...))))).........)))))))).......))).))))(((((....))))).)).. ( -49.70) >DroAna_CAF1 3791 120 - 1 AACCGAAUGGCCAAGUGUGAGACUUUUACUUGCACAUCAAUGCCAUCGGGUUCUGUUUCACUGUACGGCAUAUCAAGCAUGCACUUCAUGCUCAUUACAUCGUCCACGCUAGGCUGUGUC ......((((((.((((((.(((................(((((..(((...........)))...)))))....((((((.....)))))).........))))))))).))))))... ( -34.30) >consensus AUCCGGAUGAUCAGUUCGGUGAGCUGCAACUGCAACUCAA____________CG___CCAUUUCGUGGCAAAUCAAUCAUGCUCUUCAUGGUGGCCACAUCGUCCAAGCACGGAUGCGAC ....(((((((........((((.(((....))).)))).........................(((((......((((((.....)))))).))))))))))))............... (-22.99 = -23.60 + 0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:17 2006