Locus 2100

Sequence ID 2R_DroMel_CAF1
Location 7,860,028 – 7,860,138
Length 110
Max. P 0.687943
window3480

overview

Window 0

Location 7,860,028 – 7,860,138
Length 110
Sequences 5
Columns 112
Reading direction forward
Mean pairwise identity 83.02
Mean single sequence MFE -23.92
Consensus MFE -15.00
Energy contribution -15.12
Covariance contribution 0.12
Combinations/Pair 1.23
Mean z-score -1.99
Structure conservation index 0.63
SVM decision value 0.32
SVM RNA-class probability 0.687943
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7860028 110 + 20766785
UUUGGCACUAUGUGCGUACACUGUGCACAUGUAUGUGUG--AGUAAAGUUUGUUUGCCUCAAAAAUAAAGCAAACAAAAACAUAAACUUAAAACAACACAAUCCAACCGAUG
.((((...((((((((.......))))))))..((((((--(((....(((((((((............))))))))).......))))......)))))......)))).. ( -23.30)
>DroSec_CAF1 2944 110 + 1
UUUGGCGCUAUGUGCGUACACUGUGCACAUGUAUGUGUG--AGUAAAGUUUGUUUGCCUCAAAAAUAAAGCAAACAAAAACAGAAACGUAAAACAACACAAUAAAACCGAUG
.((((.((.(((((((.......))))))))).(((((.--.((....(((((((((............))))))))).((......))...)).)))))......)))).. ( -23.20)
>DroSim_CAF1 3148 110 + 1
UUUGGCACUAUGUGCGUAUACUGUGCACAUGUAUGUGUG--AGUAAAGUUUGUUUGCCUCAAAAAUAAAGCAAACAAAAACAGAAACGUAAAACAACACAAUAAAACCGAUG
.((((...((((((((.......))))))))..(((((.--.((....(((((((((............))))))))).((......))...)).)))))......)))).. ( -23.10)
>DroEre_CAF1 4129 111 + 1
UUUGUUACUAUGUGAGUACAAUGUGCACAUGUAUGUGUGUUUGUAAUGUUUGUUUGCUUCAAAAGGAAA-CAAGCAAAAACAGAAUCAGCAAACAACACAACCCAAGCGAUG
.(((((..((((((.((((...)))).))))))(((((((((((....(((((((((((.....(....-))))))..))))))....)))))).))))).....))))).. ( -28.30)
>DroYak_CAF1 2958 102 + 1
UUUGCCACUAUGUGUGUACAAUGUGCACAAGUAUGUGUG--AGUAAAGUUUGUUUUCUUGAAAAGGAAA-GAAGCCU-AACAGAACAA-GAAGCAAUACAAC-----CGAUG
.((((((((((.(((((((...))))))).))).)))..--.((...((((.(((((((....))))))-)))))..-.)).......-...))))......-----..... ( -21.70)
>consensus
UUUGGCACUAUGUGCGUACACUGUGCACAUGUAUGUGUG__AGUAAAGUUUGUUUGCCUCAAAAAUAAAGCAAACAAAAACAGAAACAUAAAACAACACAAUAAAACCGAUG
.(((((((((((((.((((...)))).)))))).)))...........(((((((((............)))))))))............................)))).. (-15.00 = -15.12 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:16 2006